SNP Marker Development for Purity Test of Oriental Melon and Melon |
An, Song-Ji
(Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University)
Kwon, Jin-Kyung (Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University) Yang, Hee-Bum (Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University) Choi, Hye-Jeong (Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University) Jeong, Hee-Jin (Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University) Kim, Yong-Jae (NH Seed Research & Development Center) Choi, Gyung-Ja (Korea Research Institute of Chemical Technology) Kang, Byoung-Cheorl (Department of Plant Science, Plant Genomics and Breeding Institute, and Research Institute for Agriculture and Life Sciences, College of Agriculture and Life Sciences, Seoul National University) |
1 | Ahmadian A, Gharizadeh B, Gustafsson AC, Sterky F, Uhlén NM, Lundeberg M. 2000. Single-nucleotide polymorphism analysis by Pyrosequencing. Analytical Biochemistry 280:103-110. DOI ScienceOn |
2 | Ai CX, Lu L, Ma GB, Liu ZX. 2005. Application of SSR markers in hybrid seed purity test of melon. Acta Horticulturae Sinica 32(5):902–904. |
3 | Deleu W, Esteras C, Roig C, Gonzalez-To M, Fernandez-Silva I, Gonzalez-Ibeas D, Blanca J, Pere MA, Nuez F, Monforte1 AJ, Pico MB, Garcia- Mas J. 2009. A set of EST-SNPs for map saturation and cultivar identification in melon. BMC Plant Biology 9:90-99. DOI |
4 | Gonzalez-Ibeas D, Blanca J, Roig C, Gonzalez-To M, Pico B, Truniger V, Gomez P, Deleu W, Cano-Delgado A, Arus P, Nuez F, Garcia-Mas J, Puigdomenech P, Aranda MA. 2007. MELOGEN: an EST database for melon functional genomics. BMC genomics 8:306. DOI |
5 | Gundry CN, Vandersteen JG, Reed GH, Pryor RJ, Chen J, Wittwer CT. 2003. Amplicon melting analysis with labeled primers: A closed-tube method for differentiating homozygotes and heterozygotes. Clin Chem 49(3):396-406. DOI ScienceOn |
6 | Howell WM, Jobs M, Gyllensten U, Brookes AJ. 1999. Dynamic allele-specific hybridization: A new method for scoring single nucleotide polymorphisms. Nature Biotech 17:67-68. DOI ScienceOn |
7 | Kang WH, Hoang NH, Yang HB, Kwon JK, Jo SH, Seo JK, Kim KH, Choi D, Kang BC. 2010. Molecular mapping and characterization of a single dominant gene controlling CMV resistance in peppers (Capsicum annuum L.). Theor Appl Genet 120:1587-1596. DOI ScienceOn |
8 | Li JF, Ma GB, Xu L. 2008. SSR markers for identification of purity of melon hybrids. Chinese J. of Agri Biotech 5(3):223-229. DOI |
9 | Liu JL, Zhou SC, Song XH, Wang JS. 2006. Purity test of melon hybrid with SSR molecular markers. Mol Plant Breeding 4: 6(S):23–26. |
10 | Ma GB. 2004. Study on the application of starch gel electrophoresis for the identification of hybrid purity of watermelon and melon. Seed 23(3):30–32. |
11 | McGuigan FE, Ralston SH. 2002. Single nucleotide polymorphism detection: allelic discrimination using TaqMan. Psychiatr Genet 12:133–136. |
12 | Mhlanga M, Malmberg L. 2001. Using Molecular Beacons to detect single-nucleotide polymorphisms with real-time PCR. Methods 25:463-471. DOI ScienceOn |
13 | Montgomery J, Wittwer CT, Robert P, Luming Z. 2007. Simultaneous mutation scanning and genotyping by high resolution DNA melting analysis. Nature Protocols 2:59-66. DOI |
14 | Myakishev M, Khripin Y, Hu S, Hamer D. 2001. High-Throughput SNP genotyping by allele-specific PCR with universal energy-transfer-labeled primers. Genome Res 11:163-169. DOI ScienceOn |
15 | Reed GH, Wittwer CT. 2004. Sensitivity and specificity of single-nucleotide polymorphism scanning by high-resolution melting analysis. Clin Chem 50:1748-1754. DOI ScienceOn |
16 | Orita M, Iwahana H, Kanazawa H, Hayashi K, Sekiya T. 1989. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86:2766–2770. |
17 | Park SW, An SJ, Yang HB, Kwon JK, Kang BC. 2009. Optimization of high resolution melting analysis and discovery of single nucleotide polymorphism in Capsicum. Hort Environ Biotechnol 50(1):31-39. |
18 | Rapley R, Harbron SE. 2004. Molecular analysis and genome discovery. Sussex, UK: Wiley. Pp. 113-126. |
19 | Sun MM, Choi KJ, Kim HS, Song BH, Woo SH, Lee CW, Jong SK, Cho YG. 2009. Genetic diversity and discrimination of recently distributed Korean cultivars by SSR markers. Korean J. Breed Sci 41(2):115-125. |
20 | Wang YH, Thomas CE, Dean RA. 1997. A genetic map of melon (Cucumis melo L.) based on amplified fragment length polymorphism (AFLP) markers. Theor Appl Genet 95:791-798. DOI ScienceOn |
21 | Wolf C, Rentsch J, Hubner P 1999. PCR-RFLP analysis of mitochondrial DNA: a reliable method for species identification. J Agric Food Chem 1999, 47:1350-1355. DOI ScienceOn |
22 | Wu SB, Wirthensohn MG, Hunt P, Gibson JP, Sedgley M. 2008. High resolution melting analysis of almond SNPs derived from ESTs. Theor Appl Genet 118:1-14. DOI ScienceOn |
23 | Zhai WQ, Tian QZ, Jia JZ, Dong YS. 2002. Identification of purity of Hami melon hybrid with AFLP fingerprint. Acta Hort Sinica 29(6):587. |