Inferring Single Nucleotide Polymorphisms in MicroRNA Binding Sites of Lung Cancer-related Inflammatory Genes |
He, Fei
(Department of Epidemiology, School of Public Health, Fujian Medical University)
Zheng, Ling-Ling (Department of Prevention and Health Care, FuJian Medical University Uion Hospital) Luo, Wen-Ting (Department of Chronic and Endemic Disease Control, Xiamen Center for Disease Control and Prevention) Yang, Rong (Department of Medical Record Management, FuJian Medical University Uion Hospital) Xu, Xiao-Qin (School Office, School of Nursing, Fujian Medical University) Cai, Lin (Department of Epidemiology, School of Public Health, Fujian Medical University) |
1 | Lee J, Taneja V, Vassallo R (2012). Cigarette smoking and inflammation: cellular and molecular mechanisms. J Dent Res, 91, 142-9. DOI ScienceOn |
2 | Liu C, Zhang F, Li T, et al (2012). MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs. BMC Genomics, 13, 661. DOI |
3 | Mishra PJ1, Bertino JR (2009). MicroRNA polymorphisms: the future of pharmacogenomics, molecular epidemiology and individualized medicine. Pharmacogenomics, 10, 399-416. DOI ScienceOn |
4 | Betel D, Koppal A, Agius P, et al (2010). Comprehensive modeling of microRNA targets predicts functional nonconserved and non-canonical sites. Genome Biol, 11, 90. DOI ScienceOn |
5 | Bhat IA, Pandith AA, Bhat BA, et al (2013). Lack of association of a common polymorphism in the 3'-UTR of interleukin 8 with non small cell lung cancer in Kashmir. Asian Pac J Cancer Prev, 14, 4403-8. 과학기술학회마을 DOI ScienceOn |
6 | Chen Z, Xu L, Ye X, et al (2013). Polymorphisms of microRNA sequences or binding sites and lung cancer: a meta-analysis and systematic review. PLoS One, 8, 61008. DOI |
7 | Cheng M, Yang L, Yang R, et al (2013). A microRNA-135a/b binding polymorphism in CD133 confers decreased risk and favorable prognosis of lung cancer in Chinese by reducing CD133 expression. Carcinogenesis, 34, 2292-9. DOI ScienceOn |
8 | Cho WC, Kwan CK, Yau S, et al (2011). The role of inflammation in the pathogenesis of lung cancer. Expert Opin Ther Targets, 15, 1127-37. DOI ScienceOn |
9 | Coussens LM, Werb Z (2002). Inflammation and cancer. Nature, 420, 860-7. DOI ScienceOn |
10 | Ohnishi S, Ma N, Thanan R, et al (2013). DNA damage in inflammation-related carcinogenesis and cancer stem cells. Oxid Med Cell Longev, 387014. |
11 | Richardson K, Lai CQ, Parnell LD, et al (2011). A genome-wide survey for SNPs altering microRNA seed sites identifies functional candidates in GWAS. BMC Genomics, 12, 504. DOI |
12 | Saunders MA, Liang H, Li WH (2007). Human polymorphism at microRNAs and microRNA target sites. Proc Natl Acad Sci USA, 104, 3300-5. DOI ScienceOn |
13 | Song CQ, Zhang JH, Shi JC, et al (2014). Bioinformatic prediction of SNPs within miRNA binding sites of inflammatory genes associated with gastric cancer. Asian Pac J Cancer Pre, 15, 937-43. 과학기술학회마을 DOI ScienceOn |
14 | Tomari Y, Zamore PD (2005). Perspective: machines for RNAi. Genes Dev, 19, 517-29. DOI ScienceOn |
15 | Wu Y, Xiao Y, Ding X, et al (2011). A miR-200b/200c/429-binding site polymorphism in the 3’ untranslated region of the AP-2alpha gene is associated with cisplatin resistance. PLoS ONE, 6, 29043. DOI |
16 | Zhang W, Edwards A, Zhu D, et al (2012). miRNA-mediated relationships between Cis-SNP genotypes and transcript intensities in lymphocyte cell lines. PLoS One, 7, 31429. DOI |
17 | Ding J, Gao Y, He Y, et al (2011). Screening SNPs residing in the microRNA-binding sites of hepatocellular carcinoma related genes. Int J Data Min Bioinform, 5, 1-21. DOI |
18 | Grivennikov SI, Greten FR, Karin M (2010). Immunity, inflammation, and cancer. Cell, 140, 883-99. DOI ScienceOn |
19 | Hariharan M, Scaria V, Brahmachari SK. dbSMR: a novel resource of genome-wide SNPs affecting microRNA mediated regulation. BMC Bioinformatics, 10, 108. |
20 | Yu H, Zhao H, Wang LE, et al (2011). An analysis of single nucleotide polymorphisms of 125 DNA repair genes in the Texas genome-wide association study of lung cancer with a replication for the XRCC4 SNPs. DNA Repair, 10, 398-407. DOI ScienceOn |
21 | Zu Y, Ban J, Xia Z, et al (2013). Genetic variation in a miR-335 binding site in BIRC5 alters susceptibility to lung cancer in Chinese Han populations. Biochem Biophys Res Commun, 430, 529-34. DOI ScienceOn |
22 | John B, Enright AJ, Aravin A, et al (2004). Human MicroRNA targets. PLoS Biol, 2, 363. DOI ScienceOn |
23 | Houghton AM, Mouded M, Shapiro SD (2008). Common origins of lung cancer and COPD. Nat Med, 14, 1023-4. DOI ScienceOn |
24 | Hussain SP, Harris CC (2007). Inflammation and cancer: an ancient link with novel potentials. Int J Cancer, 121, 2373-80. DOI ScienceOn |
25 | Jemal A, Bray F, Center MM, et al (2011). Global cancer statistics. CA Cancer J Clin, 61, 69-90. DOI |
26 | Kim M, Chen X, Chin LJ, et al (2014). Extensive sequence variation in the 3' untranslated region of the KRAS gene in lung and ovarian cancer cases. Cell Cycle, 13. |
27 | Lagos-Quintana M, Rauhut R, Lendeckel W, et al (2001). Identification of novel genes coding for small expressed RNAs. Science, 294, 853-8. DOI ScienceOn |
28 | Lee G, Walser TC, Dubinett SM (2009). Chronic inflammation, chronic obstructive pulmonary disease, and lung cancer. Curr Opin Pulm Med, 15, 303-7. DOI ScienceOn |
29 | McMillan DH, Baglole CJ, Thatcher TH, et al (2011). Lungtargeted overexpression of the NF-kappaB member RelB inhibits cigarette smoke-induced inflammation. Am J Pathol, 179, 125-33. DOI ScienceOn |
30 | Shen N, Gong T, Wang JD, et al (2011). Cigarette smoke-induced pulmonary inflammatory responses are mediated by EGR-1/GGPPS/MAPK signaling. Am J Pathol, 178, 110-8. DOI ScienceOn |
31 | Hattar K, Savai R, Subtil FS, et al (2013). Endotoxin induces proliferation of NSCLC in vitro and in vivo: role of COX-2 and EGFR activation. Cancer Immunol Immunothe, 62, 309-20. DOI |
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