Bioinformatic Prediction of SNPs within miRNA Binding Sites of Inflammatory Genes Associated with Gastric Cancer |
Song, Chuan-Qing
(Department of Epidemiology, College of Public Health, Zhengzhou University)
Zhang, Jun-Hui (Department of Epidemiology, College of Public Health, Zhengzhou University) Shi, Jia-Chen (Department of Epidemiology, College of Public Health, Zhengzhou University) Cao, Xiao-Qin (Department of Epidemiology, College of Public Health, Zhengzhou University) Song, Chun-Hua (Department of Epidemiology, College of Public Health, Zhengzhou University) Hassan, Adil (Department of Epidemiology, College of Public Health, Zhengzhou University) Wang, Peng (Department of Epidemiology, College of Public Health, Zhengzhou University) Dai, Li-Ping (Department of Epidemiology, College of Public Health, Zhengzhou University) Zhang, Jian-Ying (Department of Epidemiology, College of Public Health, Zhengzhou University) Wang, Kai-Juan (Department of Epidemiology, College of Public Health, Zhengzhou University) |
1 | Skeeles LE, Fleming JL, Mahler KL, and Toland AE (2013). The impact of 3'UTR variants on differential expression of candidate cancer susceptibility genes. PLoS One, 8, e58609. DOI |
2 | Wu Q, Jin H, Yang Z, et al (2010). MiR-150 promotes gastric cancer proliferation by negatively regulating the proapoptotic gene EGR2. Biochem Biophys Res Commun, 392, 340-5. DOI |
3 | Zabaleta J (2012). MicroRNA: A Bridge from H. pylori Infection to Gastritis and Gastric Cancer Development. Front Genet, 3, 294. |
4 | Ziebarth JD, Bhattacharya A, Chen A, and Cui Y (2012). PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. Nucleic Acids Res, 40, D216-21. DOI |
5 | Schetter AJ, Heegaard NH, and Harris CC (2010). Inflammation and cancer: interweaving microRNA, free radical, cytokine and p53 pathways. Carcinogenesis, 31, 37-49. DOI ScienceOn |
6 | Shiotani A, Uedo N, Iishi H, et al (2012). H. pylori eradication did not improve dysregulation of specific oncogenic miRNAs in intestinal metaplastic glands. J Gastroenterol, 47, 988-98. DOI |
7 | Song H, Wang Q, Guo Y, et al (2013). Microarray analysis of microRNA expression in peripheral blood mononuclear cells of critically ill patients with influenza A (H1N1). BMC Infect Dis, 13, 257. DOI |
8 | Spinelli L, Gambette P, Chapple CE, et al (2013). Clust&See: a Cytoscape plugin for the identification, visualization and manipulation of network clusters. Biosystems, 113, 91-5. DOI |
9 | Wang G, van der Walt JM, Mayhew G, et al (2008). Variation in the miRNA-433 binding site of FGF20 confers risk for Parkinson disease by overexpression of alpha-synuclein. Am J Hum Genet, 82, 283-9. DOI |
10 | Wang L, Liu W, Jiang W, et al (2012). A miRNA binding site single-nucleotide polymorphism in the 3'-UTR region of the IL23R gene is associated with breast cancer. PLoS One, 7, e49823. DOI |
11 | Wu J, Liu X, and Wang Y (2013). Predictive value of preoperative serum CCL2, CCL18, and VEGF for the patients with gastric cancer. BMC Clin Pathol, 13, 15. DOI |
12 | Lheureux S, Lambert B, Krieger S, et al (2011). Two novel variants in the 3'UTR of the BRCA1 gene in familial breast and/or ovarian cancer. Breast Cancer Res Treat, 125, 885-91. DOI ScienceOn |
13 | Lipchina I, Elkabetz Y, Hafner M, et al (2011). Genome-wide identification of microRNA targets in human ES cells reveals a role for miR-302 in modulating BMP response. Genes Dev, 25, 2173-86. DOI |
14 | Landi D, Barale R, Gemignani F, and Landi S (2011). Prediction of the biological effect of polymorphisms within microRNA binding sites. Methods Mol Biol, 676, 197-210. DOI |
15 | Lewis BP, Shih IH, Jones-Rhoades MW, et al (2003). Prediction of mammalian microRNA targets. Cell, 115, 787-98. DOI ScienceOn |
16 | Nicoloso MS, Sun H, Spizzo R, et al (2010). Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility. Cancer Res, 70, 2789-98. DOI |
17 | Ross KE, Arighi CN, Ren J, et al (2013). Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint. Database (Oxford), 2013, bat038. |
18 | Ryan BM, Robles AI, and Harris CC (2010). Genetic variation in microRNA networks: the implications for cancer research. Nat Rev Cancer, 10, 389-402. DOI ScienceOn |
19 | Satoh J (2012). Molecular network analysis of human microRNA targetome: from cancers to Alzheimer's disease. BioData Min, 5, 17. DOI |
20 | Hiard S, Charlier C, Coppieters W, et al (2010). Patrocles: a database of polymorphic miRNA-mediated gene regulation in vertebrates. Nucleic Acids Res, 38, D640-51. DOI |
21 | Gruber AR, Lorenz R, Bernhart SH, et al (2008). The Vienna RNA websuite. Nucleic Acids Res, 36, W70-4. |
22 | Iuliano R, Vismara MF, Dattilo V, et al (2013). The role of microRNAs in cancer susceptibility. Biomed Res Int, 2013, 591931. |
23 | Hartgrink HH, Jansen EP, van Grieken NC, and van de Velde CJ (2009). Gastric cancer. Lancet, 374, 477-90. DOI ScienceOn |
24 | He L, Thomson JM, Hemann MT, et al (2005). A microRNA polycistron as a potential human oncogene. Nature, 435, 828-33. DOI ScienceOn |
25 | Hussain SP, and Harris CC (2007). Inflammation and cancer: an ancient link with novel potentials. Int J Cancer, 121, 2373-80. DOI ScienceOn |
26 | Kertesz M, Iovino N, Unnerstall U, et al (2007). The role of site accessibility in microRNA target recognition. Nat Genet, 39, 1278-84. DOI ScienceOn |
27 | Konturek PC, Konturek SJ, and Brzozowski T (2009). Helicobacter pylori infection in gastric cancerogenesis. J Physiol Pharmacol, 60, 3-21. |
28 | Kumar A, Wong AK, Tizard ML, et al (2012). miRNA_Targets: a database for miRNA target predictions in coding and noncoding regions of mRNAs. Genomics, 100, 352-6. DOI |
29 | Liu C, Zhang F, Li T, et al (2012). MirSNP, a database of polymorphisms altering.pdf. BMC Genomics, 13, 611. DOI |
30 | Allavena P, Germano G, Marchesi F, and Mantovani A (2011). Chemokines in cancer related inflammation. Exp Cell Res, 317, 664-73. DOI |
31 | Bartel DP (2009). MicroRNAs: target recognition and regulatory functions. Cell, 136, 215-33. DOI ScienceOn |
32 | Carthew RW (2006). Gene regulation by microRNAs. Curr Opin Genet Dev, 16, 203-8. DOI ScienceOn |
33 | Grivennikov SI, Greten FR, and Karin M (2010). Immunity, inflammation, and cancer. Cell, 140, 883-99. DOI ScienceOn |
34 | Crone SG, Jacobsen A, Federspiel B, et al (2012). microRNA-146a inhibits G protein-coupled receptor-mediated activation of NF-kappaB by targeting CARD10 and COPS8 in gastric cancer. Mol Cancer, 11, 71. DOI |
35 | Engels EA, Wu X, Gu J, et al (2007). Systematic evaluation of genetic variants in the inflammation pathway and risk of lung cancer. Cancer Res, 67, 6520-7. DOI |
36 | Gonda TA, Tu S, and Wang TC (2009). Chronic inflammation, the tumor microenvironment and carcinogenesis. Cell Cycle, 8, 2005-13. DOI |