Screening of Differentially Expressed Genes Related to Bladder Cancer and Functional Analysis with DNA Microarray |
Huang, Yi-Dong
(Department of Pediatric Surgery, West China Hospital of Sichuan University)
Shan, Wei (Department of Pediatric Surgery, West China Hospital of Sichuan University) Zeng, Li (Department of Pediatric Surgery, West China Hospital of Sichuan University) Wu, Yang (Department of Pediatric Surgery, West China Hospital of Sichuan University) |
1 | Amamoto R, Yagi M, Song Y, et al (2011). Mitochondrial p32/C1QBP is highly expressed in prostate cancer and is associated with shorter prostate-specific antigen relapse time after radical prostatectomy. Cancer Sci, 102, 639-47. DOI ScienceOn |
2 | Avritscher EBC, Cooksley CD, Grossman HB, et al (2006). Clinical model of lifetime cost of treating bladder cancer and associated complications. Urol, 68, 549-53. DOI ScienceOn |
3 | Baris D, Karagas MR, Verrill C, et al (2009). A case-control study of smoking and bladder cancer risk: emergent patterns over time. J Natl Cancer Inst, 101, 1553-61. DOI ScienceOn |
4 | Benjamini Y, Hochberg Y (1995). Controlling the False Discovery Rate - A Practical and Powerful Approach to Multiple Testing. J R Stat Soc Series B Stat Methodol, 57, 289-300. |
5 | Brokstad KA, Kalland K-H, Russell WC , Matthews DA (2001). Mitochondrial protein p32 can accumulate in the nucleus. Biochem Biophys Res Commun, 281, 1161-9. DOI ScienceOn |
6 | Ching CB, Hansel DE (2010). Expanding therapeutic targets in bladder cancer: the PI3K/Akt/mTOR pathway. Lab Invest, 90, 1406-14. DOI ScienceOn |
7 | Deb TB , Datta K (1996). Molecular cloning of human fibroblast hyaluronic acid-binding protein confirms its identity with P-32, a protein co-purified with splicing factor SF2 - Kyaluronic acid-binding protein as P-32 protein, co-purified with splicing factor SF2. J Biol Chem, 271, 2206-12. DOI |
8 | Dedio J, Mueller-Esterl W (1996). Kininogen binding protein p33/gC1qR is localized in the vesicular fraction of endothelial cells. FEBS Lett, 399, 255-8. DOI ScienceOn |
9 | Duncan D, Prodduturi N, Zhang B (2010). WebGestalt2: an updated and expanded version of the Web-based Gene Set Analysis Toolkit. BMC Bioinformatics, 11. |
10 | Dunham I, Kundaje A, Aldred SF, et al (2012). An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74. DOI ScienceOn |
11 | Dyrskjot L, Kruhoffer M, Thykjaer T, et al (2004). Gene expression in the urinary bladder: A common carcinoma in situ gene expression signature exists disregarding histopathological classification. Cancer Res, 64, 4040-8. DOI ScienceOn |
12 | Fujita A, Sato JR, Rodrigues LdO, et al (2006). Evaluating different methods of microarray data normalization. BMC Bioinformatics, 7, 469. DOI |
13 | Gupta S, Datta K (1991). Possible role of hyaluronectin on cell-adhesion in rat histiocytoma. Exp Cell Res, 195, 386-94. DOI ScienceOn |
14 | Gakis G, Schwentner C, Todenhoefer T , Stenzl A (2012). Current status of molecular markers for prognostication and outcome in invasive bladder cancer. BJU Int, 110, 233-7. DOI ScienceOn |
15 | Ghebrehiwet B, Lim B-L, Peerschke EIB, et al (1994). Isolation, cDNA cloning, and overexpression of a 33-kD cell surface glycoprotein that binds to the globular “heads” of C1q. J Exp Med, 179, 1809-21. DOI |
16 | Goldberg AD, Allis CD, Bernstein E (2007). Epigenetics: A landscape takes shape. Cell, 128, 635-8. DOI ScienceOn |
17 | Heney NM (1992). Natural-history of superficial bladder-cancer-prognostic features and long-team disease couse. Urol Clin North Am, 19, 429-33. |
18 | Jeong H, Tombor B, Albert R, et al (2000). The large-scale organization of metabolic networks. Nature, 407, 651-4. DOI ScienceOn |
19 | Jiang J, Zhang Y, Krainer AR , Xu RM (1999). Crystal structure of human p32, a doughnut-shaped acidic mitochondrial matrix protein. Proc Natl Acad Sci U S A, 96, 3572-7. DOI |
20 | Kamal A , Datta K (2006). Upregulation of hyaluronan binding protein 1 (HABP1/p32/gC1qR) is associated with cisplatin induced apoptosis. Apoptosis, 11, 861-74. DOI |
21 | Li Z, Zhao J, Du Y, et al (2008). Down-regulation of 14-3-3zeta suppresses anchorage-independent growth of lung cancer cells through anoikis activation. Proc Natl Acad Sci U S A, 105, 162-7. DOI ScienceOn |
22 | Majumdar M, Meenakshi J, Goswami SK, Datta K (2002). Hyaluronan binding protein 1 (HABP1)/C1QBP/p32 is an endogenous substrate for MAP kinase and is translocated to the nucleus upon mitogenic stimulation. Biochem Biophys Res Commun, 291, 829-37. DOI ScienceOn |
23 | Neal CL, Yu D (2010). 14-3-3zeta as a prognostic marker and therapeutic target for cancer. Expert Opin Ther Targets, 14, 1343-54. DOI ScienceOn |
24 | Malmstrom PU, Larsson A, Johansson S (1993). Urinary fibronectin in diagnosis and follow-up of patients with urinary bladder cancer. Br J Urol, 72, 307-10. DOI ScienceOn |
25 | Matthews DA, Russell WC (1998). Adenovirus core protein V interacts with p32-a protein which is associated with both the mitochondria and the nucleus. J Gen Virol, 79, 1677-85. |
26 | Mitra AP, Datar RH, Cote RJ (2006). Molecular pathways in invasive bladder cancer: New insights into mechanisms, progression, and target identification. J Clin Oncol, 24, 5552-64. DOI |
27 | Niemantsverdriet M, Wagner K, Visser M, Backendorf C (2008). Cellular functions of 14-3-3 zeta in apoptosis and cell adhesion emphasize its oncogenic character. Oncogene, 27, 1315-9. DOI ScienceOn |
28 | Noh DY, Ahn SJ, Lee RA, et al (2001). Overexpression of peroxiredoxin in human breast cancer. Anticancer Res, 21, 2085-90. |
29 | Parkin DM (2008). The global burden of urinary bladder cancer. Scand J Urol Nephrol, 42, 12-20. |
30 | Pasin E, Josephson DY, Mitra AP, et al (2008). Superficial bladder cancer: an update on etiology, molecular development, classification, and natural history. Rev Urol, 10, 31-43. |
31 | Proctor I, Stoeber K, Williams GH (2010). Biomarkers in bladder cancer. Histopathology (Oxford), 57, 1-13. |
32 | Puzio-Kuter AM, Castillo-Martin M, Kinkade CW, et al (2009). Inactivation of p53 and Pten promotes invasive bladder cancer. Genes Dev, 23, 675-80. DOI ScienceOn |
33 | Ranganathan S, Ganguly AK, Datta K (1994). Evidence for presence of hyaluronan binding protein on spermatozoa and its possible involvement in sperm function. Mol Reprod Dev, 38, 69-76. DOI ScienceOn |
34 | Ryu J, Park SG, Park BC, et al (2011). Proteomic analysis of psoriatic skin tissue for identification of differentially expressed proteins: up-regulation of GSTP1, SFN and PRDX2 in psoriatic skin. Int J Mol Med, 28, 785-92. |
35 | Rao CM, Deb TB, Datta K (1996). Hyaluronic acid induced hyaluronic acid binding protein phosphorylation and inositol triphosphate formation in lymphocytes. Biochem Mol Biol Int, 40, 327-37. |
36 | Reef S, Shifman O, Oren M, Kimchi A (2007). The autophagic inducer smARF interacts with and is stabilized bythe mitochondrial p32 protein. Oncogene, 26, 6677-83. DOI ScienceOn |
37 | Rubinstein DB, Stortchevoi A, Boosalis M, et al (2004). Receptor for the globular heads of Clq (gClq-R, p33, hyaluronan-binding protein) is preferentially expressed by adenocarcinoma cells. Int J Cancer, 110, 741-50. DOI ScienceOn |
38 | Sengupta A, Banerjee B, Tyagi RK, Datta K (2005). Golgi localization and dynamics of hyaluronan binding protein 1 (HABP1/p32/C1QBP) during the cell cycle. Cell Res, 15, 183-6. DOI ScienceOn |
39 | Siegel RL, Jemal A, Thun MJ, et al (2008). Trends in the incidence of colorectal cancer in relation to county-level poverty among blacks and whites. J Natl Med, 100, 1441-4. |
40 | Smith-Pearson PS, Kooshki M, Spitz DR, et al (2008). Decreasing peroxiredoxin II expression decreases glutathione, alters cell cycle distribution, and sensitizes glioma cells to ionizing radiation and H(2)O(2). Free Radic Biol Med, 45, 1178-89. DOI ScienceOn |
41 | Soini Y, Kallio JP, Hirvikoski P, et al (2006). Oxidative/nitrosative stress and peroxiredoxin 2 are associated with grade and prognosis of human renal carcinoma. APMIS, 114, 329-37. DOI ScienceOn |
42 | Szklarczyk D, Franceschini A, Kuhn M, et al (2011). The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res, 39, D561-8. DOI |
43 | Yu HY, Greenbaum D, Lu HX, et al (2004). Genomic analysis of essentiality within protein networks. Trends Genet, 20, 227-31. DOI ScienceOn |
44 | Tong AHY, Drees B, Nardelli G, et al (2002). A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules. Science, 295, 321-4. DOI ScienceOn |
45 | Troyanskaya O, Cantor M, Sherlock G, et al (2001). Missing value estimation methods for DNA microarrays. Bioinformatics, 17, 520-5. DOI ScienceOn |
46 | Wen Z, Wang Z, Wang S, et al (2011). Discovery of molecular mechanisms of traditional Chinese medicinal formula Si-Wu-Tang using gene expression microarray and connectivity map. PLoS One, 6, e18278. DOI ScienceOn |
47 | Zaharieva BM, Simon R, Diener PA, et al (2003). High-throughput tissue microarray analysis of 11q13 gene amplification (CCNDI, FGF3, FGF4, EMSI) in urinary bladder cancer. J Pathol, 201, 603-8. DOI ScienceOn |
48 | Zang L, Palmer Toy D, Hancock WS, et al (2004). Proteomic analysis of ductal carcinoma of the breast using laser capture microdissection, LC-MS, and 16O/18O isotopic labeling. J Proteome Res, 3, 604-12. DOI ScienceOn |
49 | Zhu Z, Shen Z, Xu C (2012). Inflammatory pathways as promising targets to increase chemotherapy response in bladder cancer. Mediators Inflamm, 2012, 528690. |