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http://dx.doi.org/10.7472/jksii.2020.21.3.103

A New Hyper Parameter of Hounsfield Unit Range in Liver Segmentation  

Kim, Kangjik (Dept. of Computer Science and Engineering, Kyonggi University)
Chun, Junchul (Dept. of Computer Science and Engineering, Kyonggi University)
Publication Information
Journal of Internet Computing and Services / v.21, no.3, 2020 , pp. 103-111 More about this Journal
Abstract
Liver cancer is the most fatal cancer that occurs worldwide. In order to diagnose liver cancer, the patient's physical condition was checked by using a CT technique using radiation. Segmentation was needed to diagnose the liver on the patient's abdominal CT scan, which the radiologists had to do manually, which caused tremendous time and human mistakes. In order to automate, researchers attempted segmentation using image segmentation algorithms in computer vision field, but it was still time-consuming because of the interactive based and the setting value. To reduce time and to get more accurate segmentation, researchers have begun to attempt to segment the liver in CT images using CNNs, which show significant performance in various computer vision fields. The pixel value, or numerical value, of the CT image is called the Hounsfield Unit (HU) value, which is a relative representation of the transmittance of radiation, and usually ranges from about -2000 to 2000. In general, deep learning researchers reduce or limit this range and use it for training to remove noise and focus on the target organ. Here, we observed that the range of HU values was limited in many studies but different in various liver segmentation studies, and assumed that performance could vary depending on the HU range. In this paper, we propose the possibility of considering HU value range as a hyper parameter. U-Net and ResUNet were used to compare and experiment with different HU range limit preprocessing of CHAOS dataset under limited conditions. As a result, it was confirmed that the results are different depending on the HU range. This proves that the range limiting the HU value itself can be a hyper parameter, which means that there are HU ranges that can provide optimal performance for various models.
Keywords
U-Net; Liver Segmentation; Hounsfield Unit (HU); ResUNet;
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1 Yann Lecun, Leon Bottou, T. Bengio, Patrick Haffner, "Gradient based learning applied to document recognition", IEEE, Vol.86, No.11, pp 2274-2324, 1998. https://doi.org/10.1109/5.726791
2 Redmon, J., Divvala, S., Girshick, R., & Farhadi, A. "You Only Look Once: Unified, Real-Time Object Detection", CVPR, 2016. https://doi.org/10.1109/cvpr.2016.91
3 Zhang, W., Li, R., Deng, H., Wang, L., Lin, W., Ji, S., Shen D.,"Deep convolutional neural networks for multi-modality isointense infant brain image segmentation", NeuroImage, Vol.108, pp. 214-224, 2015. https://doi.org/10.1016/j.neuroimage.2014.12.061   DOI
4 Xu, W., Liu, H., Wang, X., & Qian, Y., "Liver Segmentation in CT based on ResUNet with 3D Probabilistic and Geometric Post Process", ICSIP, 2019. https://doi.org/10.1109/siprocess.2019.8868690
5 Lee, J., Kim, N., Lee, H., Seo, J. B., Won, H. J., Shin, Y. M.,. "Efficient liver segmentation using a level-set method with optimal detection of the initial liver boundary from level-set speed images", Computer Methods and Programs in Biomedicine, Vol.88, No.1, pp.26-38, 2007. https://doi.org/10.1016/j.cmpb.2007.07.005   DOI
6 Lu, F., Wu, F., Hu, P., Peng, Z., & Kong, D."Automatic 3D liver location and segmentation via convolutional neural network and graph cut", International Journal of Computer Assisted Radiology and Surgery, Vol.12, No.2, pp.171-182, 2016. https://doi.org/10.1007/s11548-016-1467-3
7 Seo, K.-S., Kim, H.-B., Park, T., Kim, P.-K., & Park, J.-A., "Automatic Liver Segmentation of Contrast Enhanced CT Images Based on Histogram Processing", Lecture Notes in Computer Science, pp. 1027-1030, 2005. https://doi.org/10.1007/11539087_135
8 Ozgun Cicek, Ahmed Abdulkadir, "3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation", MICCAI, Vol.9901, pp.424-432, 2016. https://doi.org/10.1007/978-3-319-46723-8_49
9 UNet : Olaf Ronneberger, Philipp Fischer, Thomas Brox, "U-Net: Convolutional Networks for Biomedical Image Segmentation", MICCAI, pp.234-341, 2015. https://doi.org/10.1007/978-3-319-24574-4_28
10 Long, J., Shelhamer, E., & Darrell, T. , "Fully Convolutional Networks for Semantic Segmentation", CVPR, 2015. https://doi.org/10.1109/cvpr.2015.7298965
11 Kamaruddin, N., Rajion, Z. A., Yusof, A., & Aziz, M. E., "Relationship between Hounsfield unit in CT scan and gray scale", CBCT, 2016. https://doi.org/10.1063/1.4968860
12 Patrick Ferdinand Christ, Florian Ettlinger, "Automatic Liver Tumor Segmentation of CT and MRI Volumes Using Cascaded Fully Convolutional Neural Networks", Arxiv preprint 1702.05970, 2017. https://arxiv.org/abs/1702.05970
13 Milletari, F., Navab, N., & Ahmadi, S.-A. (2016). V-Net: Fully Convolutional Neural Networks for Volumetric Medical Image Segmentation. 2016 Fourth International Conference on 3D Vision (3DV). IEEE, 2016. https://doi.org/10.1109/3dv.2016.79
14 Qiangguo Jin, Zhaopeng Meng, Changming Sun, Leyi Wei, Ran Su,"A hybrid deep attention-aware network to extract liver and tumor in CT scans", Arxiv preprint 1811.01328, 2018. https://arxiv.org/pdf/1811.01328.pdf
15 Xiaomeng Li, Hao Chen, "H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes", IEEE Transactions on Medical Imaging, Vol.37, No.12, pp. 2663-267, 2018. https://doi.org/10.1109/tmi.2018.2845918   DOI
16 Fang Lu, Fa Wu, "Automatic 3D liver location and segmentation via convolutional neural networks and graph cut", International Journal of Computer Assisted Radiology and Surgery, Vol.12, No.2, pp.171-182, 2016. https://doi.org/10.1007/s11548-016-1467-3
17 Zhe Liu, Yu-Qing Song, "Liver CT sequence segmentation based with improved U-Net and graph cut", Expert Systems with Applications, Vol.126, pp.54-63, 2019. https://doi.org/10.1016/j.eswa.2019.01.055   DOI
18 Patrick Ferdinand Christ, Mohamed Ezzeldin A. Elshaer, Florian Ettlinger, "Automatic Liver and Lesion segmentation in CT Using Cascaded Fully Convolutinoal Neural Networks and 3D Conditional Random Fields", MICCAI, pp.415-423, 2016. https://doi.org/10.1007/978-3-319-46723-8_48
19 Miriam Bellver, Kevis-Kokitsi Maninis, et al., "Detection-aided liver lesion segmentation using deep learning", Arxiv preprint 1711.11069, 2017. https://arxiv.org/abs/1711.11069
20 Soomro, T. A., Hellwich, O., Afifi, A. J., Paul, M., Gao, J., & Zheng, L., "Strided U-Net Model: Retinal Vessels Segmentation using Dice Loss", 2018 Digital Image Computing: Techniques and Applications (DICTA), 2018. https://doi.org/10.1109/dicta.2018.8615770
21 Yuan, Y., Chao, M., & Lo, Y.-C., "Automatic Skin Lesion Segmentation Using Deep Fully Convolutional Networks With Jaccard Distance", IEEE Transactions on Medical Imaging, Vol.36, No.9, pp.1876-1886, 2017. https://doi.org/10.1109/tmi.2017.2695227   DOI
22 Antonia Creswell, Kai Arulkumaran, Anil A. Bharath, "On denoising autoencoders trained to minimise binary cross-entropy", Arxiv Preprint 1708.08487, 2017. https://arxiv.org/pdf/1708.08487.pdf
23 hang, Z.,"Improved Adam Optimizer for Deep Neural Networks", International Symposium on Quality of Service (IWQoS), 2018. https://doi.org/10.1109/iwqos.2018.8624183
24 Barret Zoph, Quoc V. Le, "Neural architecture search with reinforcement learning", Arxiv Preprint 1611.01578, 2016. https://arxiv.org/pdf/1611.01578.pdf
25 Yoon-Jin Lee, Myoung-Hoon Lee, In-June Jo, "GNUnet improvement for anonymity supporting in large multimedia file", Journal of Internet Computing and Services, Vol.7, No.5, pp.71-80, 2006. http://www.jics.or.kr/digital-library/422
26 Nguyen Tran Lan Anh, Guee-Sang Lee, "Color Object Segmentation using Distance Regularized Level Set", Journal of Internet Computing and Services, Vol.13, No.4, pp.53-62, 2012. http://www.jics.or.kr/digital-library/947   DOI
27 Jaejoon Seo, Junchul Chun, Jin-Sung Lee, "An Automatic Mobile Cell Counting System for the Analysis of Biological Image", Journal of Internet Computing and Services, Vol.16, No.1, pp.39-46, 2015. http://www.jics.or.kr/digital-library/1120   DOI