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http://dx.doi.org/10.15616/BSL.2021.27.4.283

Development of Reverse Transcriptase Polymerase Chain Reaction Primer Sets and Standard Positive Control Capable of Verifying False Positive for the Detection of Severe acute respiratory syndrome coronavirus 2  

Cho, Kyu Bong (Department of Biomedical Laboratory Science, Shinhan University)
Abstract
Severe acute respiratory syndrome coronavirus (SARS-CoV2) is a major coronavirus that infects humans with human Coronavirus (HuCoV)-229E, HCoV-OC43, HCoV-HKU1, HCoV-NL63, Severe acute respiratory syndrome coronavirus (SARS-CoV) and Middle east respiratory syndrome coronavirus (MERS-CoV). SARS-CoV2 is currently a global pandemic pathogen. In this study, we developed conventional RT-PCR based diagnostic system for the detection of SARS-CoV2 which is relatively inexpensive but has high stability and a wide range of users. Three conventional RT-PCR primer sets capable of forming specific band sizes by targeting the ORF1ab [232 nucleotide (nt)], E (200 nt) and N (288 nt) genes of SARS-CoV2 were developed, respectively, and it were confirmed to be about 10~100 times higher detection sensitivity than the previously reported methods. In addition, a standard positive control that can generate specific amplicons by reacting with the developed RT-PCR primers and verify the false-positiv from contamination of the laboratory was produced. Therefore, the diagnostic system that uses the RT-PCR method is expected to be used to detect SARS-CoV2.
Keywords
Conventional RT-PCR; SARS-CoV2; Severe acute respiratory syndrome coronavirus; Standard positive control;
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1 Andersen KG, Rambaut A, Lipkin WI, Holmes EC, Garry RF. The proximal origin of SARS-CoV-2. Nature Med. 2020. 26: 450-452.   DOI
2 Carroll A, McNamara E. Comparison and correlation of commercial SARS-CoV-2 real-time-PCR assays. Euro Surveill. 2021. 26: 2002079.
3 Cho KB. Development of nested PCR primer set for the specific and highly sensitive detection of human Parvovirus B19. Biomed Sci Lett. 2018. 24: 390-397.   DOI
4 Corman VM, Landt O, Kaiser M, et al. Detection of 2019 novel coronavirus (2019-nCoV) by real-time RT-PCR. Euro Surveill. 2020. 25: 2000045.
5 Hall T. BioEdit: A user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symp Ser. 1999. 41: 95-98.
6 Jung S, Lee DY, Choi W, Kang C. Introduction of reference materials for water- and food-borne disease viruses. Public Health Weekly Rep. 2018. 9: 254-259.
7 Gorbalenya AE, Baker SC, Baric RS, et al. The species Severe acute respiratory syndrome-related coronavirus: classifying 2019-nCoV and naming it SARS-CoV-2. Nature Microbiol. 2020. 5: 536-544.   DOI
8 Lee S. A study of molecular biological detection methods for seed-transmitted viruses in quarantine. Ph. D. thesis. 2013. Dankook University, Cheonan, Chungcheongnam-do, Korea.
9 Lee S, Lee JY, Moon BY, et al. Development of a diagnostic system for the detection of the Cowpea mild mottle virus specific gene in quarantine. Microbiol Biotechnol Lett. 2015. 43: 296-299.   DOI
10 Santos N, Mendes GS, Silva RC, Pena GA, Rojas M, Amorim AR, Lima DP. Salivirus and aichivirus A infections in children with gastroenteritis in Brazil. Clin Microbiol Infect. 2015. 21: 799.e1-799.e3.   DOI
11 Mollaei HR, Afshar AA, Kalantar-Neyestanaki D, Fazlalipour M, Aflatoonian B. Comparison five primer sets from different genome region of COVID-19 for detection of virus infection by conventional RT-PCR. Iran J Microbiol. 2020. 12: 185-193.
12 van Doremalen N, Bushmaker T, Morris DH, et al. Aerosol and surface stability of SARS-CoV-2 as compared with SARS-CoV-1. New England J Med. 2020. 382: 1564-1567.   DOI
13 Yamashita T, Ito M, Kabashima Y, Tsuzuki H, Fujiura A, Sakae K. Isolation and characterization of a new species of kobuvirus associated with cattle. J Gen Virol. 2003. 84: 3069-3077.   DOI
14 Zhou P, Yang XL, Wang XG, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature. 2020. 579: 270-273.   DOI
15 Reuter G, Boldizsar A, Papp G, Pankovics P. Detection of Aichivirus shedding in a child with enteric and extraintestinal symptoms in Hungary. Arch Virol. 2009. 154: 1529-1532.   DOI
16 Domenico MD, Rosa AD, Boccellino M. Detection of SARS-COV-2 proteins using an ELISA test. Diagnostics (Basel). 2021. 11: 698.   DOI
17 Lee S, Cho KB. Development of reverse transcription semi-nested PCR primer pairs for the specific and highly sensitive detection of human Aichivirus A1. Biomed Sci Lett. 2019. 25: 331-338.   DOI
18 Lee S, Bae KS, Lee JY, et al. Development of molecular diagnostic system with high sensitivity for the detection of human Sapovirus from water environments. Biomed Sci Lett. 2021. 27: 35-43.   DOI
19 Lee SG, Lee SH, Park SW, et al. Standardized positive controls for detection of norovirus by reverse transcription PCR. Virol J. 2011. 260: 1-8.