Browse > Article
http://dx.doi.org/10.15616/BSL.2019.25.1.99

Classification of 18F-Florbetaben Amyloid Brain PET Image using PCA-SVM  

Cho, Kook (Institute of Convergence Bio-Health, Dong-A University)
Kim, Woong-Gon (Economic Survey, Gyeongin Regional Statistics Office)
Kang, Hyeon (Institute of Convergence Bio-Health, Dong-A University)
Yang, Gyung-Seung (Ubicod Company)
Kim, Hyun-Woo (Department of Industrial Engineering, Hanyang University)
Jeong, Ji-Eun (Institute of Convergence Bio-Health, Dong-A University)
Yoon, Hyun-Jin (Institute of Convergence Bio-Health, Dong-A University)
Jeong, Young-Jin (Institute of Convergence Bio-Health, Dong-A University)
Kang, Do-Young (Institute of Convergence Bio-Health, Dong-A University)
Abstract
Amyloid positron emission tomography (PET) allows early and accurate diagnosis in suspected cases of Alzheimer's disease (AD) and contributes to future treatment plans. In the present study, a method of implementing a diagnostic system to distinguish ${\beta}$-Amyloid ($A{\beta}$) positive from $A{\beta}$ negative with objectiveness and accuracy was proposed using a machine learning approach, such as the Principal Component Analysis (PCA) and Support Vector Machine (SVM). $^{18}F$-Florbetaben (FBB) brain PET images were arranged in control and patients (total n = 176) with mild cognitive impairment and AD. An SVM was used to classify the slices of registered PET image using PET template, and a system was created to diagnose patients comprehensively from the output of the trained model. To compare the per-slice classification, the PCA-SVM model observing the whole brain (WB) region showed the highest performance (accuracy 92.38, specificity 92.87, sensitivity 92.87), followed by SVM with gray matter masking (GMM) (accuracy 92.22, specificity 92.13, sensitivity 92.28) for $A{\beta}$ positivity. To compare according to per-subject classification, the PCA-SVM with WB also showed the highest performance (accuracy 89.21, specificity 71.67, sensitivity 98.28), followed by PCA-SVM with GMM (accuracy 85.80, specificity 61.67, sensitivity 98.28) for $A{\beta}$ positivity. When comparing the area under curve (AUC), PCA-SVM with WB was the highest for per-slice classifiers (0.992), and the models except for SVM with WM were highest for the per-subject classifier (1.000). We can classify $^{18}F$-Florbetaben amyloid brain PET image for $A{\beta}$ positivity using PCA-SVM model, with no additional effects on GMM.
Keywords
Alzheimer's disease; Gray matter; ${\beta}$-Amyloid; PCA; SVM; $^{18}F$-FBB PET;
Citations & Related Records
Times Cited By KSCI : 2  (Citation Analysis)
연도 인용수 순위
1 Xue DX, Zhang R, Feng H, Wang YL. CNN-SVM for microvascular morphological type recognition with data augmentation. Journal of Medical and Biological Engineering. 2016. 36: 755-764.   DOI
2 Zhang Y, Dong Z, Wu L, Wang S. A hybrid method for MRI brain image classification. Expert Systems with Applications. 2011. 38: 10049-10053.   DOI
3 Blanc-Durand P, Van Der Gucht A, Guedj E, Abulizi M, Aoun-Sebaiti M, Lerman L, Verger A, Authier FJ, Itti E. Cerebral 18F-FDG PET in macrophagic myofasciitis: An individual SVM-based approach. PloS One. 2017. 12: e0181152.   DOI
4 Brucher N, Mandegaran R, Filleron T, Wagner T. Measurement of inter- and intra-observer variability in the routine clinical interpretation of brain 18-FDG PET-CT. Annals of Nuclear Medicine. 2015. 29: 233-239.   DOI
5 Varma S, Simon R. Bias in error estimation when using crossvalidation for model selection. BMC Bioinformatics. 2006. 7: 91.   DOI
6 DeLong ER, DeLong DM, Clarke-Pearson KL. Comparing the areas under two or more correlated receiver operating characteristic curves: a nonparametric approach. Biometrics. 1988. 44: 837-845.   DOI
7 Bullich S, Seibyl J, Catafau AM, Jovalekic A, Koglin N, Barthel H, Sabri O, Santi SD. Optimized classification of $^{18}F$-Florbetaben PET scans as positive and negative using an SUVR quantitative approach and comparison to visual assessment. NeuroImage Clinical. 2017. 15: 325-332.   DOI
8 Chaves R, Ramirez J, Gorriz JM, Illan IA, Salas-Gonzalez D. FDG and PIB biomarker PET analysis for the Alzheimer's disease detection using Association Rules. IEEE Nuclear Science Symposium and Medical Imaging Conference Record. 2012. s2576-2579.
9 Choi WH, Um YH, Jung WS, Kim SH. Automated quantification of amyloid positron emission tomography: a comparison of PMOD and MIMNEURO. Annals of Nuclear medicine. 2016. 30: 682-689.   DOI
10 Goncalves AB, Souza JS, da Silva GG, Cereda MP, Pott A, Naka MH, Pistori H. Feature extraction and machine learning for the classification of Brazilian savannah pollen grains. PloS One. 2016. 11: e0157044.   DOI
11 Barthel H, Gertz HJ, Eresel S, Peters O, Bartenstein P, Buerger K, Hiemeyer F, Wittmer-Rump SM, Seibyl J, Reininger C, Sabri O. Cerebral amyloid-${\beta}$ PET with florbetaben (18F) in patients with Alzheimer's disease and healthy controls: a multicenter phase 2 diagnostic study. The Lancet Neurology. 2011. 10: 424-435.   DOI
12 Bergstra J, Bengio Y. Random search for hyper-parameter optimization. Journal of Machine Learning Research. 2012. 13: 281-305.
13 Gulshan V, Peng L, Coram M, Stumpe MC, Wu D, Narayanaswamy A, Kim R. Development and validation of a deep learning algorithm for detection of diabetic retinopathy in retinal fundus photographs. Jama. 2016. 316: 2402-2410.   DOI
14 Lopresti BJ, Klunk WE, Mathis CA, Hoge JA, Ziolko SK, Lu X, Price JC. Simplified quantification of Pittsburgh Compound B amyloid imaging PET studies: a comparative analysis. Journal of Nuclear Medicine. 2005. 46: 1959-1972.
15 Gunasekaran TI, Ohn T. MicroRNAs as Novel Biomarkers for the Diagnosis of Alzheimer's Disease and Modern Advancements in the Treatment. Biomedical Science Letters. 2015. 21: 1-8.   DOI
16 Haass C, Selkoe DJ. Soluble protein oligomers in neurodegeneration: lessons from the Alzheimer's amyloid ${\beta}$-peptide. Nature Reviews Molecular Cell Biology. 2007. 8: 101.   DOI
17 Illan IA, Gorriz JM, Ramirez J, Salas-Gonzalez D, Lopez MM, Segovia F, Chaves R, Gomez-Rio M, Puntonet CG. The Alzheimer's Disease Neuroimaging Initiative. $^{18}F$-FDG PET imaging analysis for computer aided Alzheimer's Diagnosis. 2011. 181: 903-916.   DOI
18 Kang H, Kim WG, Yang GS, Kim HW, Jeong JE, Yoon HJ, Cho K, Jeong YJ, Kang DY. VGG-based BAPL score classification of 18F-Florbetaben Amyloid Brain PET. J Exp Biomed Sci. 2018.
19 Lakhani P, Sundaram B. Deep learning at chest radiography: automated classification of pulmonary tuberculosis by using convolutional neural networks. Radiology. 2017. 284: 574-582.   DOI
20 Lundeen TF, Seibyl JP, Covington MF, Eshghi N, Kuo PH. Signs and artifacts in Amyloid PET. Radio Graphics. 2018. 38: 2123-2133.
21 Mockus J, Tiesis V, Zilinskas A. The Application of Bayesian Methods for Seeking the Extremum: Toward global optimization 2. 1978. pp 117. Elsevier. Amsterdam, Netherlands.
22 Oh IS. Pattern recognition. 2008. pp 137-173. Kyobobook. Seoul, Korea.
23 Segovia F, Sanchez-Vano R, Gorriz JM, Ramirez J, Sopena-Novales P, Dardel NT, Gomez-Rio M. Using CT data to improve the quantitative analysis of $^{18}F$-FBB PET neuroimages. Frontiers in Aging Neuroscience. 2018. 10: 158.   DOI
24 Pedregosa F, Varoquaux G, Gramfort A, Michel V, Thirion B, Grisel O, Blondel M, Prettenhofer P, Weiss R, Dubourg V, Vanderplas J, Passos A, Cournapeau D. Scikit-learn: machine learning in python. Journal of Machine Learning Research. 12: 2825-2830.
25 Piramal Imaging Limited. Neuraceq. Summary of product characteristics. Cambridge: Piramal Imaging Limited. 2014.
26 Platt J. Probabilistic outputs for support vector machines and comparisons to regularized likelihood methods. Advances in Large Margin Classifiers. 1999. 10: 61-74.
27 Taylor JC, Fenner JW. Comparison of machine learning and semiquantification algorithms for (I123) FP-CIT classification: the beginning of the end for semi-quantification?. EJNMMI Physics. 2017. 4: 29.   DOI
28 Seibyl J, Catafau AM, BARthel H, Ishii K, Rowe CC, Leverenz JB, Ghetti B, Ironside JW, Takao M, Akatsu H, Murayama S, Bullich S, Mueller A, Koglin N, Schulz-Schaeffer WJ, Hoffmann A, Sabbagh MN, Stephens AW, Sabri O. Impact of training method on the robustness of the visual assessment of 18F-Florbetaben PET scan: results from a phase-3 study. J Nucl Med. 2016. 57: 900-906.   DOI
29 Sherman M, Cessie SL. A comparison between bootstrap methods and generalized estimating equations for correlate outcomes in generalized linear models. Communications in Statistics-Simulation and Computation. 1997. 26: 901-925.   DOI
30 Snoek J, Larochelle H, Adams RP. Pracical Bayesian optimization of machine learning algorithm. In Advances in Neural Information Processing System. 2012. 2951-2959.
31 Vapnik VN. 10.5 Support Vector Machine: Statistical Learning Theory. 1998. pp 421-441. Wiley-Interscience. Hoboken, USA.