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Molecular Phylogeny and Distribution of Far Eastern Oryzias latipes Based on Mitochondrial Cytochrome b Gene Sequence  

Eah, Jae-Yong (National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology)
Yoo, Jeong-Ha (Department of Chemical & Bioengineering, Kyungwon University)
Kang, Tae-Wook (National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology)
Kim, Moo-Sang (Department of Molecular Cellular and Developmental Biology, Yale University)
Kim, Chang-Bae (National Genome Information Center, Korea Research Institute of Bioscience and Biotechnology)
Publication Information
Korean Journal of Ichthyology / v.18, no.1, 2006 , pp. 12-19 More about this Journal
Abstract
To examine the relationship of geological distribution and phylogenetic tree of O. latipes in the Far East, we analyzed cytochrome b (cyt b) gene in the mitochondrial genome. In this study we employed the entire sequence of cyt b of 53 samples collected from nine Korean locations and 117 cyt b data retrieved from the GenBank. From 170 Oryzias latipes cyt b sequence data, 142 different haplotypes were identified and phylogenetic relationship was reconstructed based on the dataset. According to the phylogeny, haplotypes were divided into three major haplogroups A, B and C, and their relationships were well correlated to their distributional patterns. Haplogroup A which is widely distribute in the southern part of Korea is separated in the geographical distribution from the haplogroup B which is found from China to the western part of Korea. Haplogroup C is only found in Japan.
Keywords
Oryzias latipes; mitochondrial cytochrome b; phylogenetic tree; geographical distribution;
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