Browse > Article
http://dx.doi.org/10.7235/hort.2014.13094

Discrimination of African Yams Containing High Functional Compounds Using FT-IR Fingerprinting Combined by Multivariate Analysis and Quantitative Prediction of Functional Compounds by PLS Regression Modeling  

Song, Seung Yeob (Greenbio Research Center, Korea Research Institute of Bioscience and Biotechnology)
Jie, Eun Yee (Greenbio Research Center, Korea Research Institute of Bioscience and Biotechnology)
Ahn, Myung Suk (Greenbio Research Center, Korea Research Institute of Bioscience and Biotechnology)
Kim, Dong Jin (School of Life Sciences and Bioengineering, The Nelson Mandela African Institute of Science and Technology)
Kim, In Jung (Faculty of Biotechnology, College of Applied Life Sciences, Jeju National University)
Kim, Suk Weon (Microbiological Resource Center, Korea Research Institute of Bioscience and Biotechnology)
Publication Information
Horticultural Science & Technology / v.32, no.1, 2014 , pp. 105-114 More about this Journal
Abstract
We established a high throughput screening system of African yam tuber lines which contain high contents of total carotenoids, flavonoids, and phenolic compounds using ultraviolet-visible (UV-VIS) spectroscopy and Fourier transform infrared (FT-IR) spectroscopy in combination with multivariate analysis. The total carotenoids contents from 62 African yam tubers varied from 0.01 to $0.91{\mu}g{\cdot}g^{-1}$ dry weight (wt). The total flavonoids and phenolic compounds also varied from 12.9 to $229{\mu}g{\cdot}g^{-1}$ and from 0.29 to $5.2mg{\cdot}g^{-1}$dry wt. FT-IR spectra confirmed typical spectral differences between the frequency regions of 1,700-1,500, 1,500-1,300 and $1,100-950cm^{-1}$, respectively. These spectral regions were reflecting the quantitative and qualitative variations of amide I, II from amino acids and proteins ($1,700-1,500cm^{-1}$), phosphodiester groups from nucleic acid and phospholipid ($1,500-1,300cm^{-1}$) and carbohydrate compounds ($1,100-950cm^{-1}$). Principal component analysis (PCA) and subsequent partial least square-discriminant analysis (PLS-DA) were able to discriminate the 62 African yam tuber lines into three separate clusters corresponding to their taxonomic relationship. The quantitative prediction modeling of total carotenoids, flavonoids, and phenolic compounds from African yam tuber lines were established using partial least square regression algorithm from FT-IR spectra. The regression coefficients ($R^2$) between predicted values and estimated values of total carotenoids, flavonoids and phenolic compounds were 0.83, 0.86, and 0.72, respectively. These results showed that quantitative predictions of total carotenoids, flavonoids, and phenolic compounds were possible from FT-IR spectra of African yam tuber lines with higher accuracy. Therefore we suggested that quantitative prediction system established in this study could be applied as a rapid selection tool for high yielding African yam lines.
Keywords
carotenoid; flavonoid; partial least squares regression(PLSR); phenolics compound; principal component analysis(PCA); UV-VIS spectrophotometer;
Citations & Related Records
Times Cited By KSCI : 5  (Citation Analysis)
연도 인용수 순위
1 Adeleke, R.O. 2010. Current position of sanitations in nigerian food Industries. Pak. J. Nutr. 9:664-667.   DOI
2 Aktumsek, A., G. Zengin, G.O. Guler, Y.S. Cakmak, and A. Duran. 2013. Assessment of the antioxidant potential and fatty acid composition of four Centaurea L. taxa from Turkey. Food Chem. 141:91-97.   DOI
3 Argyri, A.A., R.M. Jarvis, D. Wedge, Y. Xu, E.Z. Panagou, R. Goodacre, and G.J.E. Nychas. 2013. A comparison of Raman and FT-IR spectroscopy for the prediction of meat spoilage. Food Control 29:461-470.   DOI
4 Pascoa, R.N.M.J., L.M. Magalhaes, and J.A. Lopes. 2013. FT-NIR spectroscopy as a tool for valorization of spent coffee grounds: Application to assessment of antioxidant properties. Food Res. Intl. 51:579-586.   DOI
5 Song, H.P., B.D. Kim, E.H. Shin, D.S. Song, H.J. Lee, and D.H. Kim. 2010. Effect of gamma irradiation on the microbiological and general quality characteristics of fresh yam juice. Kor. J. Food Preserv. 17:494-499.
6 Wold, S., M. Sjöström, and L. Eriksson. 2001. PLS-regression: A basic tool of chemometrics. Chemometrics and Intelligent Lab. Systems 58:109-130.
7 Stadnik, M.J. and H. Buchenauer. 2000. Inhibition of phenylalanine ammonia-lyase suppresses the resistance induced by benzothiadiazole in wheat to Blumeria graminis f. sp. tritici. Physiol. Mol. Plant Pathol. 57:25-34.   DOI   ScienceOn
8 Trygg, J., E. Holmes, and T. Londstedt. 2007. Chemometrics in metabonomics. J. Proteomes Res. 6:467-479.
9 Wolkers, W.F., A.E. Oliver, F. Tablin, and J.H. Crowe. 2004. A fourier transform infrared spectroscopy study of sugar glasses. Carb. Res. 339:1077-1085.   DOI
10 Wu, C.H., H.N. Murthy, E.J. Hahn, and K.Y. Paek. 2007. Improved production of caffeic acid derivatives in suspension cultures of Echinacea purpurea by medium replenishment strategy. Arch. Pharm. Res. 30:945-949.   DOI   ScienceOn
11 Yang, C.M., K.W. Chang, M.H. Yin, and H.M. Huang. 1998. Methods for the determination of the chlorophylls and their derivatives. Taiwania 43:116-122.
12 Yang, M.H., K.D. Yoon, Y.W. Chin, and J.W. Kim. 2009. Phytochemical and pharmacological profiles of Dioscorea species in Korea, China and Japan. Kor. J. Pharmacogn. 40:257-279.   과학기술학회마을
13 D'Souza, L., P. Devi, M.P.D. Shridhar, and C.G. Naik. 2008. Use of Fourier Transform Infrared (FTIR) spectroscopy to study cadmium-Induced changes in Padina Tetrastromatica (Hauck) Anal. Chem. Insights 3:135-143.
14 Bastiena, P., V.E. Vinzi, and M. Tenenhaus. 2005. PLS generalised linear regression. Computational Stat. Data Analysis 48:17-46.   DOI
15 Fiehn, O., J. Kopka, P. Drmann, T. Altmann, R. Trethewey, and L. Willmitzer. 2000. Metabolite profiling for plant functional genomics. Nat. Biotechnol. 18:1157-1161.   DOI   ScienceOn
16 Chen, Y., M. Xie, H. Zhang, Y. Wang, S. Nie, and C. Li. 2012. Quantification of total polysaccharides and triterpenoids in Ganoderma lucidum and Ganoderma atrum by near infrared spectroscopy and chemometrics. Food Chem. 135:268-275.   DOI
17 Dumas, P. and L. Miller. 2003. The use of synchrotron infrared microspectroscopy in biological and biomedical investigations. Vib. Spec. 32:3-21.   DOI
18 Gallardo-Velazquez, T., G. Osorio-Revilla, M. Zuniga de Loa, and Y. Rivera-Espinoza. 2009. Application of FTIR-HATR spectroscopy and multivariate analysis to the quantification of adulterants in Mexican honeys. Food Res. Intl. 42:313-318.   DOI   ScienceOn
19 Hoskuldsson, A. 1988. PLS regression methods. J. Chemometrics 2:211-228.   DOI
20 Im, S.A., Y.H. Kim, S.H. Oh, T.K. Ha, and M.J. Lee. 1995. The study on the comparisions of ingredients in yam and bitter taste material of African yam. J. Kor. Soc. Food Nutr. 24:74-81.   과학기술학회마을
21 Mevik, B.H. and R. Wehrens. 2007. The pls package: Principal component and partial least squares regression in R. J. Stat. Software 18(1):1-24.   DOI
22 Zhishen, J., T. Mengcheng, and W. Jianming. 1999. The determination of flavonoid contents in mulberry and their scavenging effects on superoxide radicals. Food Chem. 64:555-559.   DOI   ScienceOn
23 Yao, L.H., Y.M. Jiang, J. Shi, F.A. Tomas-Barberan, N. Datta, R. Singanusong, and S.S. Chen. 2004. Flavonoids in food and their health benefits. Plant Foods Human Nutr. 59:113-122.   DOI   ScienceOn
24 Yoon, K.B. and J.K. Jang. 1989. Wild vegetables good for health. Seokoh Publihing Co., Seoul, Korea. p. 334.
25 Yuan, J., C. Wang, H. Chen, H. Zhou, and J. Ye. 2013. Prediction of fatty acid composition in Camellia oleifera oil by near infrared transmittance spectroscopy (NITS). Food Chem. 138: 1657-1662.   DOI
26 Zude, M., L. Spinelli, and A. Torricelli. 2008. Approach for non-destructive pigment analysis in model liquids and carrots by means of time-of-flight and multi-wavelength remittance readings. Analytica Chimica Acta 623:204-212.   DOI
27 Krishnan, P., N.J. Kruger, and R.G. Ratcliffe. 2005. Metabolite fingerprinting and profiling in plants using NMR. J. Exp. Bot. 56:255-265.
28 Kim, J.I., H.S. Jang, J.S. Kim, and H.Y. Sohn. 2009. Evaluation of antimicrobial, antithrombin, and antioxidant activity of Dioscorea batatas Decne. Kor. J. Microbiol. Biotechnol. 37:133-139.   과학기술학회마을
29 Kimura, M. and D.B. Rodriguez-Amaya. 2002. A scheme for obtaining standards and HPLC quantification of leafy vegetable carotenoids. Food Chem. 78:389-398.   DOI
30 Kwon, J.B., M.S. Kim, and H.Y. Sohn. 2010. Evaluation of antimicrobial, antioxidant, and antithrombin activities of the rhizome of various Dioscorea species. Kor. J. Food Preserv. 17:391-397.   과학기술학회마을
31 Kum, E.J., S.J. Park, B.H. Lee, J.S. Kim, K.H. Son, and H.Y. Sohn. 2006. Antifungal activity of phenanthrene derivatives from aerial bulbils of Diascroea batatas Decne. J. Life Sci. 16:647-652.   DOI
32 Leopold, L.F., N. Leopold, H.-A. Diehl, and C. Socaciu. 2011. Quantification of carbohydrates in fruit juices using FTIR spectroscopy and multivariate analysis. Spectroscopy 26:93-104.   DOI
33 Lichtenthaler, H.K. and C. Buschmann. 2001. Chlorophylls and carotenoids: Measurement and characterization by UV-VIS spectroscopy. Curr. Prot. Food Anal. Chem. F4.3.1-F 4.3.8.
34 Lopez-Sanchez, M., M.J. Ayora-Canada, and A. Molina-Diaz. 2010. Olive fruit growth and ripening as seen by vibrational spectroscopy. J. Agric. Food Chem. 58:82-87.   DOI   ScienceOn
35 Parker, F.S. 1983. Applications of infrared, Raman and resonance Raman spectroscopy in biochemistry. Plenum Press, New York.
36 Yee, N., L.G. Benning, V.R. Phoenix, and F.G. Ferris. 2004. Characterization of metal-Cyanobacteria sorption reactions: A combined macroscopic and infrared spectroscopic investigation. Environ. Sci. Technol. 38:775-82.   DOI
37 Wold, H. 1966. Estimation of principal components and related models by iterative least squares, p. 391-420. In: K.R. Krishnaiah (ed.). Multivariate analysis. Academic Press, New York.
38 Kofalvi, S.A. and A. Nassuth. 1995. Influence of wheat streak mosaic virus infection on phenylpropanoid metabolism and the accumulation of phenolics and lignin in wheat. Physiol. Mol. Plant Pathol. 47:365-377.   DOI