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http://dx.doi.org/10.7235/hort.2013.12184

Effects of Light Quality Using LEDs on Expression Patterns in Brassica rapa Seedlings  

Kim, Jin A (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Lee, Yeon-Hee (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Hong, Joon Ki (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Hong, Sung-Chang (Climate Change & Agroecology Division, National Academy of Agricultural Science, Rural Development Administration)
Lee, Soo In (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Choi, Su Gil (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Moon, Yi-Seul (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Koo, Bon-Sung (Functional Biomaterial Division, National Academy of Agricultural Science, Rural Development Administration)
Publication Information
Horticultural Science & Technology / v.31, no.5, 2013 , pp. 607-616 More about this Journal
Abstract
Light with two faces, beneficial and harmful effects is an important signal for every living cell. Optimal adaptation to light environment enhances the fitness of an organism and survival in nature. Understandings of light quality and plant growth provide with the economical guides for artificial light sources like LEDs. Compared with those under white light, the 1 week seedlings of Chinese cabbage (Brassica rapa) under monochromic red and blue light showed normal development and growth. In contrast to extremely long and etiolated hypocotyls of the seedlings under dark, those under far-red etiolated were extremely short. Based on the microarray analysis, blue light induced the vigorous development and growth and two fold changes of transcripts than red light condition. To have insight of gene products under different light qualities conditions, GO term enrichments were calculated and each gene according to their GO terms were categorized. The blue and red lights affected the expressions of genes related to biological process. Especially, the genes related to metabolic process and developmental process and plastid and chloroplast in the cellular component category were induced under blue light. This study provided the molecular biological evidence for various light qualities on the growing process of B. rapa.
Keywords
Chinese cabbage; genes; GO (gene ontology); microarray;
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1 Chen, M., J. Chory, and C. Fankhauser. 2004. Light signal transduction in higher plants. Annu. Rev. Genet. 38:87-117.   DOI   ScienceOn
2 Cho, J.Y., D.M. Son, J.M. Kim, B.S. Seo, S.Y. Yang, B.W. Kim, and B.G. Heo. 2008. Effects of LEDs on the germination, growth and physiological activities of amaranth sprouts. Kor. J. Hort. Sci. Technol. 26:106-112.   과학기술학회마을
3 Dubos, C., R. Stracke, E. Grotewold, B. Weisshaar, C. Martin, and L. Lepiniec. 2010. MYB transcription factors in Arabidopsis. Trends Plant Sci. 15:573-581.   DOI   ScienceOn
4 Giliberto, L., G. Perrotta, P. Pallara, J.L. Weller, P.D. Fraser, P.M. Bramley, A. Fiore, M. Tavazza, and G. Giuliano. 2005. Manipulation of the blue light photoreceptor crytochrome 2 in tomato affects vegetative development, flowering time, and fruit antioxidant content. Plant Physiol. 137:199-208.   DOI   ScienceOn
5 Hangarter, R.P. 1997. Gravity, light and plant form. Plant Cell Environ. 20:796-800.   DOI   ScienceOn
6 Hwang, M.K., C.S. Huh, and Y.J. Seo. 2004. Optic characteristics comparison and analysis of SMD type Y/G/W HB LED. J. KllEE 18:15-21.   과학기술학회마을   DOI   ScienceOn
7 Heo, J.W., Y.B. Lee, D.E. Kim, Y.S. Chang, and C.H. Chun. 2010. Effects of supplementary LED lighting on growth and biochemical parameters in Dieffenbachia amoena 'Camella' and Ficus elastica 'Melany'. Kor. J. Hort. Sci. Technol. 28:51-58.
8 Irizarry, R.A., B.M. Bolstad, F. Collin, L.M. Cope, B. Hobbs, and T.P. Speed. 2003. Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Res. 31:e15.   DOI   ScienceOn
9 Jiao, Y., L. Ma, S. Elizabeth, and X.W. Deng. 2005. Conservation and divergence of light-regulated genome expression patterns during seedling development in rice and Arabidopsis. Plant Cell 17:3239-3256.   DOI   ScienceOn
10 Katyshev, A.I., I.B. Rogozin, and Yu.M. Konstantinov. 2006. Identification of new superoxide dismutase transcripts in plants by EST analysis: alternative polyadenylation and splicing events. Comput. Struct. Funct. Genomics Transcr. 1:61-64.
11 Kim, J.A., J.S. Kim, J.K. Hong, Y.H. Lee, B.S. Choi, Y.J. Seol, and C.H. Jeon. 2012. Comparative mapping, genomic structure, and expression analysis of eight pseudo-response regulator genes in Brassica rapa. Mol. Genet. Genomics 287:373-388.   DOI   ScienceOn
12 Kim, J.W. 2010. Trend and direction for plant factory system. J. Plant Biotechnol. 37:442-455.   과학기술학회마을   DOI   ScienceOn
13 Lee, J.J., Y.M. Lee, H.D. Shin, Y.S. Jeong, and M.Y. Lee. 2007. Effects of vegetable sprout power mixture on lipid metabolism in rats fed high fat diet. J. Korean Soc. Food. Sci. Nutr. 36:965-974.   과학기술학회마을   DOI   ScienceOn
14 Lin, C. and D. Shalitin. 2003. Cryptochrome structure and signal transduction. Annu. Rev. Plant Biol. 54:469-496.   DOI   ScienceOn
15 Liu, X.Y., S.R. Guo, Z.G. Xu, and X.L. Jiao. 2011. Regulation of chloroplast ultrastructure, cross-section anatomy of leaves, and morphology of stomata of cherry tomato by different light irradiations of light-emitting diodes. Hortscience 46:217-221.
16 Minic, Z. and L. Jouanin. 2006. Plant glycoside hydrolases involved in cell wall polysaccharide degradation. Plant Physiol Biochem. 44:435-49.   DOI   ScienceOn
17 Neff, M.M., F. Christian, and C. Joanne. 2010. Light: An indicator of time and place. Genes Dev. 14:257-271.
18 Molas, M.L., J.Z. Kiss, and M.J. Correll. 2006. Gene profiling of the red light signalling pathways in roots. J. Exp. Bot. 57:3217-3229.   DOI   ScienceOn
19 Morgan, J.F., E.K. James, M.C. Rubio, G. Sarath, R.V. Klucas, and M. Becana. 2003. Functional characterization and expression of a cytosolic iron-superoxide dismutase from cowpea root nodules. Plant Physiol. 133:773-782.   DOI   ScienceOn
20 Nagaharu, U. 1935. Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Japan. J. Bot. 7:389-452.
21 Provart, N. and T. Zhu. 2003. A browser-based functional classification SuperViewer for Arabidopsis genomics. Curr. Computational Mol. Biol. 2003:271-272.
22 Raven, J.A., M.C.W. Evans, and R.E. Korb. 1999. The role of trace metals in photosynthetic electron transport in $O_2$-evolving organisms. Photosynth. Res. 60:111-149.   DOI   ScienceOn
23 Rogers, H.J., S.L. Maund, and L.H. Johnson. 2001. A beta-galactosidase-like gene is expressed during tobacco pollen development. J. Exp. Bot. 52:67-75.   DOI   ScienceOn
24 Smyth, G.K. 2004. Linear models and empirical Bayes methods for assessing differential expression in microarray experiments. Stat. Applications Genet. Mol. Biol. 3(1):3.
25 Wang, H., L. Ma, J. Habashi, J. Li, H. Zhao, and X.W. Deng. 2002. Analysis of far-red light-regulated genome expression profiles of phytochrome a pathway mutants in Arabidopsis. Plant J. 32:723-733.   DOI   ScienceOn
26 Wu, M.C, C.Y. Hou, C.M. Jiang, Y.T. Wang, C.Y. Wang, H.H. Chen, and H.M. Chang. 2007. A novel approach of LED light radiation improves the antioxidant activity of pea seedlings. Food Chem. 101:1753-1758.   DOI   ScienceOn
27 Wang, X., H. Wang, J. Wang, R. Sun, J. Wu, S. Liu, Y. Bai, J.H. Mun, I. Bancroft, F. Cheng, S. Huang, X. Li, W. Hua, M. Freeling, J.C. Pires, A.H. Paterson, B. Chalhoub, B. Wang, A. Hayward, A.G. Sharpe, B.S. Park, B. Weisshaar, B. Liu, B. Li, C. Tong, C. Song, C. Duran, C. Peng, C. Geng, C. Koh, C. Lin, D. Edwards, D. Mu, D. Shen, E. Soumpourou, F. Li, F. Fraser, G. Conant, G. Lassalle, G.J. King, G. Bonnema, H. Tang, H. Belcram, H. Zhou, H. Hirakawa, H. Abe, H. Guo, H. Jin, I.A. Parkin, J. Batley, J.S. Kim, J. Just, J. Li, J. Xu, J. Deng, J.A. Kim, J. Yu, J. Meng, J. Min, J. Poulain, K. Hatakeyama, K. Wu, L. Wang, L. Fang, M. Trick, M.G. Links, M. Zhao, M. Jin, N. Ramchiary, N. Drou, P.J. Berkman, Q. Cai, Q. Huang, R. Li, S. Tabata, S. Cheng, S. Zhang, S. Sato, S. Sun, S.J. Kwon, S.R. Choi, T.H. Lee, W. Fan, X. Zhao, X. Tan, X. Xu, Y. Wang, Y. Qiu, Y. Yin, Y. Li, Y. Du, Y. Liao, Y. Lim, Y. Narusaka, Z. Wang, Z. Li, Z. Xiong, and Z. Zhang. 2011. The genome of the mesopolyploid crop species Brassica rapa. Nat. Genet 43:1035-1039.   DOI   ScienceOn
28 Whitelam, G.C., E. Johnson, J. Peng, P. Carol, M.L. Anderson, J.S. Cowl, and N.P. Harberd. 1993. Phytochrome A null mutants of Arabidopsis display a wild-type phenotype in white light. Plant Cell 5:757-768.   DOI   ScienceOn
29 Workman, C., L.J. Jensen, H. Jarmer, R. Berka, L. Gautier, H.B. Nielser, H.H. Saxild, C. Nielsen, S. Brunak, and S. Knudsen. 2002. A new non-linear normalization method for reducing variability in DNA microarray experiments. Genome Biol. 3:1-16.
30 Zeeberg, B.R., W. Feng, G. Wang, M.D. Wang, A.T. Fojo, M. Sunshine, S. Narasimhan, D.W. Kane, W.C. Reinhold, S. Lababidi, K.J. Bussey, J. Riss, J.C. Barrett, and J.N. Weinstein. 2003. GoMiner: A resource for biological interpretation of genomic and proteomic data. Genome Biol. 4:R28.   DOI
31 Takemiya, A., S. Inoue, M. Doi, T. Kinoshita, and K. Shimazaki. 2005. Phototropins promote plant growth in response to blue light in low light environments. Plant Cell 17:1120-1127.   DOI   ScienceOn
32 Ashburner, M., C.A. Ball, J.A. Blake, D. Botstein, H. Butler, J.M. Cherry, A.P. Davis, K. Dolinski, S.S. Dwight, J.T. Eppig, M.A. Harris, D.P. Hill, L. Issel-Tarver, A. Kasarskis, S. Lewis, J.C. Matese, J.E. Richardson, M. Ringwald, G.M. Rubin, and G. Sherlock. 2000. Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium. Nat. Genet. 25:25-29.
33 Avalos, J. and E. Cerda-Olmedo. 2004. Fungal carotenoid production, pp. 367-378. In: D.K. Arora, P.D. Bridge, and D. Bhatnagar (eds.). Handbook of fungal biotechnology. Marcel Dekker, New York.
34 Blum, D.E., J.T. Elzenga, P.A. Linnemeyer, and E. Van Volkenburgh. 1992. Stimulation of growth and ion uptake in bean leaves by red and blue light. Plant Physiol. 100:1968-1975.   DOI   ScienceOn
35 Avalos, J., E.R. Bejarano, and E. Cerda-Olmedo. 1993. Photo-induction of carotenoid biosynthesis. Methods Enzymol. 214:283-294.   DOI