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http://dx.doi.org/10.7235/hort.2012.12012

Determination and Application of Combined Genotype of Simple Sequence Repeats (SSR) DNA Marker for Cultivars of Cymbidium goeringii  

Lee, Dae-Gun (Department of Flower Design, Catolic University of Daegu)
Koh, Jae-Chul (Department of Flower Design, Catolic University of Daegu)
Chung, Ki-Wha (Department of Biological Science, Kongju National University)
Publication Information
Horticultural Science & Technology / v.30, no.3, 2012 , pp. 278-285 More about this Journal
Abstract
Cymbidium goeringii is one of the most important and popular species in the orchid family in north-east Asia. In the present study, we prepared multiplex PCR system, and used it for the genotyping of eight simple sequence repeats (SSR) markers (CG409, CG415, CG709, CG722, CG787, CG1023, CG1210, and CG1281) in subject with 40 samples of cultivated varieties. All the analyzed samples showed different combined genotypes. The average combined power of discrimination was very high value of $7.14{\times}10^{-10}$, and observed heterozygosity (Ho = 0.466) was similar with two wild populations of C. goeringii, which may indicate no or little occurrence of genetic change after collection from wild habitats. The present study also developed a two-dimensional barcode to express information of genotype results of eight SSR markers (SSR DNA ID). The discrimination power of DNA ID between two individuals will be statistically more than 99.999999%. The SSR DNA ID and two-dimensional barcode may be very usefully applied for the discrimination and maintence of cultivars of C. goeringii.
Keywords
barcode; combined power of discrimination; genetic marker; genotyping; microsatellite; polymorphism;
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