1 |
Chen Z, Dunson DB. Random effects selection in linear mixed models. Biometrics 2003;59:762-769.
DOI
|
2 |
Yandell BS, Mehta T, Banerjee S, Shriner D, Venkataraman R, Moon JY, et al. R/qtlbim: QTL with Bayesian Interval Mapping in experimental crosses. Bioinformatics 2007;23:641-643.
DOI
|
3 |
Ando T. Bayesian predictive information criterion for the evaluation of hierarchical Bayesian and empirical Bayes models. Biometrika 2007;94:443-458.
DOI
|
4 |
Geweke JF. Evaluating the accuracy of sampling-based approaches to the calculation of posterior moments. Minneapolis: Federal Reserve Bank of Minneapolis, 1991.
|
5 |
Lindley DV. Bayesian Statistics: A Review. Philadelphia: Society for Industrial and Applied Mathematics, 1972.
|
6 |
Gelfand AE, Sahu SK. Identifiability, improper priors, and Gibbs sampling for generalized linear models. J Am Stat Assoc 1999;94:247-253.
DOI
|
7 |
Sabatti C, Service SK, Hartikainen AL, Pouta A, Ripatti S, Brodsky J, et al. Genome-wide association analysis of metabolic traits in a birth cohort from a founder population. Nat Genet 2009;41:35-46.
DOI
|
8 |
Mei H, Chen W, Jiang F, He J, Srinivasan S, Smith EN, et al. Longitudinal replication studies of GWAS risk SNPs influencing body mass index over the course of childhood and adulthood. PLoS One 2012;7:e31470.
DOI
|
9 |
Furlotte NA, Eskin E, Eyheramendy S. Genome-wide association mapping with longitudinal data. Genet Epidemiol 2012;36:463-471.
DOI
|
10 |
Das K, Li J, Fu G, Wang Z, Li R, Wu R. Dynamic semiparametric Bayesian models for genetic mapping of complex trait with irregular longitudinal data. Stat Med 2013;32:509-523.
DOI
|
11 |
Ma CX, Casella G, Wu R. Functional mapping of quantitative trait loci underlying the character process: a theoretical framework. Genetics 2002;161:1751-1762.
DOI
|
12 |
Satagopan JM, Yandell BS, Newton MA, Osborn TC. A Bayesian approach to detect quantitative trait loci using Markov chain Monte Carlo. Genetics 1996;144:805-816.
DOI
|
13 |
Yi N. A unified Markov chain Monte Carlo framework for mapping multiple quantitative trait loci. Genetics 2004;167:967-975.
DOI
|
14 |
Banerjee S, Yandell BS, Yi N. Bayesian quantitative trait loci mapping for multiple traits. Genetics 2008;179:2275-2289.
DOI
|
15 |
Chung W, Zou F. Mixed-effects models for GAW18 longitudinal blood pressure data. BMC Proc 2014;8(Suppl 1):S87.
DOI
|
16 |
Chung W. Statistical models and computational tools for predicting complex traits and diseases. Genomics Inform 2021;19:e36.
DOI
|
17 |
Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, et al. Finding the missing heritability of complex diseases. Nature 2009;461:747-753.
DOI
|
18 |
Yang R, Tian Q, Xu S. Mapping quantitative trait loci for longitudinal traits in line crosses. Genetics 2006;173:2339-2356.
DOI
|
19 |
Couto Alves A, De Silva NM, Karhunen V, Sovio U, Das S, Taal HR, et al. GWAS on longitudinal growth traits reveals different genetic factors influencing infant, child, and adult BMI. Sci Adv 2019;5:eaaw3095.
DOI
|
20 |
Gouveia MH, Bentley AR, Leonard H, Meeks KA, Ekoru K, Chen G, et al. Trans-ethnic meta-analysis identifies new loci associated with longitudinal blood pressure traits. Sci Rep 2021;11:4075.
DOI
|
21 |
Visscher PM, Brown MA, McCarthy MI, Yang J. Five years of GWAS discovery. Am J Hum Genet 2012;90:7-24.
DOI
|
22 |
Clarke AJ, Cooper DN. GWAS: heritability missing in action? Eur J Hum Genet 2010;18:859-861.
DOI
|
23 |
Smith EN, Chen W, Kahonen M, Kettunen J, Lehtimaki T, Peltonen L, et al. Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study. PLoS Genet 2010;6:e1001094.
DOI
|
24 |
Yi N, Xu S. Mapping quantitative trait loci with epistatic effects. Genet Res 2002;79:185-198.
DOI
|
25 |
Yi N, Yandell BS, Churchill GA, Allison DB, Eisen EJ, Pomp D. Bayesian model selection for genome-wide epistatic quantitative trait loci analysis. Genetics 2005;170:1333-1344.
DOI
|
26 |
Lehmann EL, Casella G. Theory of Point Estimation. New York: Springer, 2006.
|
27 |
Yi N, Shriner D, Banerjee S, Mehta T, Pomp D, Yandell BS. An efficient Bayesian model selection approach for interacting quantitative trait loci models with many effects. Genetics 2007;176:1865-1877.
DOI
|
28 |
Wu W, Zhou Y, Li W, Mao D, Chen Q. Mapping of quantitative trait loci based on growth models. Theor Appl Genet 2002;105:1043-1049.
DOI
|
29 |
Yap JS, Fan J, Wu R. Nonparametric modeling of longitudinal covariance structure in functional mapping of quantitative trait loci. Biometrics 2009;65:1068-1077.
DOI
|
30 |
Chung W, Chen J, Turman C, Lindstrom S, Zhu Z, Loh PR, et al. Efficient cross-trait penalized regression increases prediction accuracy in large cohorts using secondary phenotypes. Nat Commun 2019;10:569.
DOI
|
31 |
Ando T. Predictive Bayesian model selection. Am J Math Manag Sci 2011;31:13-38.
DOI
|
32 |
Jeffreys H. Theory of Probability. 3rd ed. Oxford: Clarendon, 1961.
|
33 |
Wu WR, Li WM, Tang DZ, Lu HR, Worland AJ. Time-related mapping of quantitative trait loci underlying tiller number in rice. Genetics 1999;151:297-303.
DOI
|
34 |
Yi N, George V, Allison DB. Stochastic search variable selection for identifying multiple quantitative trait loci. Genetics 2003;164:1129-1138.
DOI
|
35 |
Robert CP, Titterington DM. Discussion of a paper by D. J. Spiegelhalter et al. J. R. Stat. Soc. Ser. B 2002;64:621-622.
|
36 |
Chung W. Bayesian Parametric and Nonparametric Methods for Multiple QTL Mapping and SNP-Set Analysis. Chapel Hill: University of North Carolina at Chapel Hill, 2013.
|
37 |
Broman KW, Wu H, Sen S, Churchill GA. R/qtl: QTL mapping in experimental crosses. Bioinformatics 2003;19:889-890.
DOI
|
38 |
Gelman A, Rubin DB. Inference from iterative simulation using multiple sequences. Stat Sci 1992;7:457-472.
DOI
|
39 |
Poirier DJ. Revising beliefs in nonidentified models. Econ Theor 1998;14:483-509.
DOI
|
40 |
Eberly LE, Carlin BP. Identifiability and convergence issues for Markov chain Monte Carlo fitting of spatial models. Stat Med 2000;19:2279-2294.
DOI
|
41 |
Spiegelhalter DJ, Best NG, Carlin BP, Van Der Linde A. Bayesian measures of model complexity and fit. J R Stat Soc Series B Stat Methodol 2002;64:583-639.
DOI
|