BaSDAS: a web-based pooled CRISPR-Cas9 knockout screening data analysis system |
Park, Young-Kyu
(OmicsPia Co., Ltd.)
Yoon, Byoung-Ha (Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) Park, Seung-Jin (Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) Kim, Byung Kwon (OmicsPia Co., Ltd.) Kim, Seon-Young (Personalized Genomic Medicine Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB)) |
1 | Carpenter AE, Sabatini DM. Systematic genome-wide screens of gene function. Nat Rev Genet 2004;5:11-22. DOI |
2 | Smith AM, Heisler LE, Mellor J, Kaper F, Thompson MJ, Chee M, et al. Quantitative phenotyping via deep barcode sequencing. Genome Res 2009;19:1836-1842. DOI |
3 | Sims D, Mendes-Pereira AM, Frankum J, Burgess D, Cerone MA, Lombardelli C, et al. High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing. Genome Biol 2011;12:R104. DOI |
4 | Kim DU, Hayles J, Kim D, Wood V, Park HO, Won M, et al. Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe. Nat Biotechnol 2010;28:617-623. DOI |
5 | Parnas O, Jovanovic M, Eisenhaure TM, Herbst RH, Dixit A, Ye CJ, et al. A genome-wide CRISPR screen in primary immune cells to dissect regulatory networks. Cell 2015;162:675-686. DOI |
6 | Wang B, Wang M, Zhang W, Xiao T, Chen CH, Wu A, et al. Integrative analysis of pooled CRISPR genetic screens using MAGe CKFlute. Nat Protoc 2019;14:756-780. DOI |
7 | Eason RG, Pourmand N, Tongprasit W, Herman ZS, Anthony K, Jejelowo O, et al. Characterization of synthetic DNA bar codes in Saccharomyces cerevisiae gene-deletion strains. Proc Natl Acad Sci U S A 2004;101:11046-11051. DOI |
8 | Li W, Xu H, Xiao T, Cong L, Love MI, Zhang F, et al. MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens. Genome Biol 2014;15:554. DOI |