Identification of Genomic Differences between Hanwoo and Holstein Breeds Using the Illumina Bovine SNP50 BeadChip |
Melka, Hailu Dadi
(Department of Animal Science, Chungbuk National University)
Jeon, Eun-Kyeong (Department of Animal Science, Chungbuk National University) Kim, Sang-Wook (Department of Animal Science, Chungbuk National University) Han, James-Bond (Department of Animal Science, Chungbuk National University) Yoon, Du-Hak (Department of Animal Science, Kyungbook National University) Kim, Kwan-Suk (Department of Animal Science, Chungbuk National University) |
1 | Wade, C.M., Giulotto, E., Sigurdsson, S., Zoli, M. Gnerre, S., Imsland, F., Lear, T.L., Adelson, D.L., Bailey, E., Bellone, R.R., Blocker, H., Distl, O., Edgar, R.C., Garber, M., Leeb, T., Mauceli, E., MacLeod, J.N., Penedo, M.C., Raison, J.M., Sharpe, T., Vogel, J., Andersson, L., Antczak, D.F., Biagi, T., Binns, M.M., Chowdhary, B.P., Coleman, S.J., Della Valle, G., Fryc, S., Guerin, G., Hasegawa, T, Hill, E.W., Jurka, J., Kiialainen, A., Lindgren, G., Liu, J., Magnani, E., Mickelson, J.R., Murray, J., Nergadze, S.G., Onofrio, R., Pedroni, S., Piras, M.F., Raudsepp, T., Rocchi, M., Roed, K.H., Ryder, O.A., Searle, S., Skow, L., Swinburne, J.E., Syvanen, A.C., Tozaki, T., Valberg, S.J., Vaudin, M., White, J.R., Zody, M.C. Broad Institute Genome Sequencing Platform, Broad Institute Whole Genome Assembly Team, Lander, E.S., and Lindblad-Toh, K. (2009). Genome sequence, comparative analysis, and population genetics of the domestic horse. Science 326, 865-867. DOI |
2 | Zimin, A.V., Delcher, A.L., Florea, L., Kelley, D.R., Schatz, M.C., Puiu, D., Hanrahan, F., Pertea, G., Van Tassell, C.P., Sonstegard, T.S., Marçais, G., Roberts, M., Subramanian, P., Yorke, J.A., and Salzberg, S.L. (2009). A whole-genome assembly of the domestic cow, Bos taurus. Genome Biol. 10, R42. DOI ScienceOn |
3 | Lee, Y.M., Han, C.M., Li, Y., Lee, J.J., Kim, L.H., Kim, J.H., Kim, D.I., Lee, S.S., Park, B.L., Shin, H.D., Kim, K.S., Kim, N.S., and Kim, J.J. (2010). A whole genome association study to detect single nucleotide polymorphisms for carcass traits in Hanwoo populations. Asian-Aust. J. Anim. Sci. 23, 417-424. 과학기술학회마을 DOI |
4 | Matukumalli, L.K., Lawley, C.T., Schnabel, R.D., Taylor, J.F., Allan, M.F., Heaton, M.P., O'Connell, J., Moore, S.S., Smith, T.P., Sonstegard, T.S., and Van Tassell, C.P. (2009). Development and characterization of a high density SNP genotyping assay for cattle. PLoS. 4, e5350. DOI ScienceOn |
5 | Michelizzi1, V.N., Wu, X., Dodson, M.V., Michal, J.J., Varon, J.Z., McLean, D.J., and Jiang, Z. (2011). A Global View of 54,001 Single Nucleotide Polymorphisms (SNPs) on the Illumina BovineSNP50 BeadChip and Their Transferability to Water Buffalo. Int. J. Biol. Sci. 7, 18-27. DOI |
6 | SPSS Statistics 17.0 Brief Guide. SPSS Inc., 233 South Wacker Drive, 11 Floor, Chicago. |
7 | Uemoto, Y., Abe, T., Tameoka, N., Hasebe, H., Inou, K., Nakajima, H., Shoji, N., Kobayashi, M., and Kobayashi, E. (2010). Whole-geneome association study for fatty acid composition of oleic acid in Japanese Black cattle. Anim. Genet. 1-8. |
8 | Van Tassell, C.P., Smith, T.P., Matukumalli, L.K., Taylor, J.F., Schnabel, R.D., Lawley, C.T., Haudenschild, C.D., Moore, S.S., Warren, W.C., and Sonstegard, T.S. (2008). SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nat. Methods 5, 247-252. DOI |
9 | Bovine HapMap Consortium, Gibbs, R.A., Taylor, J.F., Van Tassell, C.P., Barendse, W., Eversole, K.A., Gill, C.A., Green, R.D., Hamernik, D.L., Kappes, S.M., Lien, S., Matukumalli, L.K., McEwan, J.C., Nazareth, L.V., Schnabel, R.D., Weinstock, G.M., Wheeler, D.A., Ajmone-Marsan, P., Boettcher, P.J., Caetano, A.R., Garcia, J.F., Hanotte, O., Mariani, P., Skow, L.C., Sonstegard, T.S., Williams, J.L., Diallo, B., Hailemariam, L., Martinez, M.L., Morris, C.A., Silva, L.O., Spelman, R.J., Mulatu, W., Zhao, K., Abbey, C.A., Agaba, M., Araujo, F.R., Bunch, R.J., Burton, J., Gorni, C., Olivier, H., Harrison, B.E., Luff, B., Machado, M.A., Mwakaya, J., Plastow, G., Sim, W., Smith, T., Thomas, M.B., Valentini, A., Williams, P., Womack, J., Woolliams, J.A., Liu, Y., Qin, X., Worley, K.C., Gao, C., Jiang, H., Moore, S.S., Ren, Y., Song, X.Z., Bustamante, C.D., Hernandez, R.D., Muzny, D.M., Patil, S., San Lucas, A., Fu, Q., Kent, M.P., Vega, R., Matukumalli, A., McWilliam, S., Sclep, G., Bryc, K., Choi, J., Gao, H., Grefenstette, J.J., Murdoch, B., Stella, A., Villa-Angulo, R., Wright, M., Aerts, J., Jann, O., Negrini, R., Goddard, M.E., Hayes, B.J., Bradley, D.G., Barbosa da Silva, M., Lau, L.P., Liu, G.E., Lynn, D.J., Panzitta, F., and Dodds, K.G. (2009). Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science 324, 528-532. DOI ScienceOn |
10 | Broeckel, U., and Hessner, M.J. (2006). Single nucleotide polymorphism. Testing DNA variation for disease association. In Molecular diagnostics: For the Clinical Laboratorian, W.B. Coleman and G.J. Tsongalis, ed. (New York, USA: Humana Press), pp.111-120. |
11 | Cole, J.B., Van Raden, P.M.O., Connell J.R., Van Tassell C.P., Sonstegard, T.S., Schnabel, R.D., Taylor, J.F., and Wiggans, G.R. (2009). Distribution and location of genetic effects for dairy traits. J. Dairy Sci. 92, 2931-2946. DOI |
12 | Hayes, B.J., Bowman, P.J., Chamberlain, A.J., and Goddard, M.E. (2009). Invited review: Genomic selection in dairy cattle: progress and challenges. J. Dairy Sci. 92, 433-443. DOI |
13 | Kijas, J.W., Townley, D., Dalrymple, B.P., Heaton, M.P., Maddox, J.F., McGrath, A., Wilson, P., Ingersoll, R.G., McCulloch, R., McWilliam, S., Tang, D., McEwan, J., Cockett, N., Oddy, V.H., Nicholas, F.W., and Raadsma, H. (2009). A Genome Wide Survey of SNP Variation Reveals the Genetic Structure of Sheep Breeds. PLoS, 4, e4668. DOI |
14 | Lee, J., Dang, C., and Kim, N. (2010). Inbreeding Trends and Pedigree Structure of Hanwoo (Korean Cattle). Proceedings Vol. II. |
15 | Alama, M., Lee, Y.M., Park, B. L., Kim, J.H., Lee, S.S., Shin, H.D., Kim, K.S., Kim, N.S., and Kim, J.J. (2011). A Whole Genome Association Study to Detect Single Nucleotide Polymorphisms for Body Conformation Traits in a Hanwoo Population. Asian-Aust. J. Anim. Sci. 24, 322-329. 과학기술학회마을 DOI ScienceOn |
16 | Bovine Genome Sequencing and Analysis Consortium, Elsik, C.G., Tellam, R.L., and Worley, K.C. (2009). The Genome Sequence of Taurine Cattle: a window to ruminant biology and evolution. Science 324, 522-528. DOI ScienceOn |
17 | Avise, J.C. (2004). Molecular markers, natural history, and evolution, (Sunderland, MA: Sinauer Associates, Inc.). |
![]() |