Bioinformatics Resources of the Korean Bioinformation Center (KOBIC) |
Lee, Byung-Wook
(Korean Bioinformation Center (KOBIC), KRIBB)
Chu, In-Sun (Korean Bioinformation Center (KOBIC), KRIBB) Kim, Nam-Shin (Korean Bioinformation Center (KOBIC), KRIBB) Lee, Jin-Hyuk (Korean Bioinformation Center (KOBIC), KRIBB) Kim, Seon-Yong (Korean Bioinformation Center (KOBIC), KRIBB) Kim, Wan-Kyu (Ewha Research Center for Systems Biology (ERCSB), Ewha Womans University) Lee, Sang-Hyuk (Korean Bioinformation Center (KOBIC), KRIBB) |
1 | Lee, S., Lee, B., Jang, I., Kim, S., and Bhak, J. (2006). Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. Nucl. Acids Res. 34, W99-103. DOI |
2 | Arakawa, K., Kono, N., Yamada, Y., Mori, H., and Tomita, M. (2005). KEGG-based pathway visualization tool for complex omics data. In Silico Biol. 5, 419-423. |
3 | Barrell, D., Dimmer, E., Huntley, R.P., Binns, D., O'Donovan, C., and Apweiler, R. (2009). The GOA database in 2009--an integrated Gene Ontology Annotation resource. Nucl. Acids Res. 37, D396-403. DOI |
4 | Burke, J., Davison, D., and Hide, W. (1999). d2_cluster: a validated method for clustering EST and full-length cDNAsequences. Genome Res. 9, 1135-1142. DOI |
5 | Cho, S., Jun, Y., Lee, S., Choi, H.S., Jung, S., Jang, Y., Park, C., Kim, S., and Kim, W. (2011). miRGator v2.0 : an integrated system for functional investigation of microRNAs. Nucl. Acids Res. 39, D158-162. DOI |
6 | Finn, R.D., Mistry, J., Tate, J., Coggill, P., Heger, A., Pollington, J.E., Gavin, O.L., Gunasekaran, P., Ceric, G., Forslund, K., Holm, L., Sonnhammer, E.L., Eddy, S.R., and Bateman, A. (2010). The Pfam protein families database. Nucl. Acids Res. 38, D211-222. DOI |
7 | Sequeira, E., McEntyre, J., and Lipman, D. (2001). PubMed Central decentralized. Nature 410, 740. DOI |
8 | Lee, S., Seo, C.H., Lim, B., Yang, J.O., Oh, J., Kim, M., Lee, B., and Kang, C. (2010). Accurate quantification of transcriptome from RNA-Seq data by effective length normalization. Nucl. Acids Res. 38, 1-10. DOI |
9 | Pruitt, K.D., Tatusova, T., and Maglott, D.R. (2007). NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucl. Acids Res. 35, D61-65. DOI |
10 | Radeva, M., Hofmann, T., Altenberg, B., Mothes, H., Richter, K.K., Pool-Zobel, B., and Greulich, K.O. (2008). The database dbEST correctly predicts gene expression in colon cancer patients. Curr. Pharm. Biotechnol. 9, 510-515. DOI |
11 | Yang, J.O., Oh, S., Ko, G., Park, S.J., Kim, W.Y., Lee, B., and Lee, S. (2011). VnD: a structure-centric database of disease-related SNPs and drugs. Nucl. Acids Res. 39, D939-944. DOI |
12 | Huang, X., and Madan, A. (1999). CAP3: A DNA sequence assembly program. Genome Res. 9, 868-877. DOI |
13 | Lee, B., and Lee, D. (2009). Protein comparison at the domain architecture level. BMC Bioinformatics 10 Suppl 15, S5. DOI |
14 | Hunter, S., Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Binns, D., Bork, P., Das, U., Daugherty, L., Duquenne, L., Finn, R.D., Gough, J., Haft, D., Hulo, N., Kahn, D., Kelly, E., Laugraud, A., Letunic, I., Lonsdale, D., Lopez, R., Madera, M., Maslen, J., McAnulla, C., McDowall, J., Mistry, J., Mitchell, A., Mulder, N., Natale, D., Orengo, C., Quinn, A.F., Selengut, J.D., Sigrist, C.J., Thimma, M., Thomas, P.D., Valentin, F., Wilson, D., Wu, C.H., and Yeats, C. (2009). InterPro: the integrative protein signature database. Nucl. Acids Res. 37, D211-215. DOI |
15 | Kall, L., Krogh, A., and Sonnhammer, E.L. (2007). Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server. Nucl. Acids Res. 35, W429-432. DOI |
16 | Kelso, J., Visagie, J., Theiler, G., Christoffels, A., Bardien, S., Smedley, D., Otgaar, D., Greyling, G., Jongeneel, C.V., McCarthy, M.I., Hide, T., and Hide, W. (2003). eVOC: a controlled vocabulary for unifying gene expression data. Genome Res. 13, 1222-1230. DOI |
17 | Lee, B., and Shin, G. (2009). CleanEST: a database of cleansed EST libraries. Nucl. Acids Res. 37, D686-689. DOI |
18 | Marguerat, S., and Bahler, J. (2010). RNA-seq: from technology to biology. Cell Mol. Life Sci. 67, 569-579. DOI |
19 | Lee, B., Hong, T., Byun, S.J., Woo, T., and Choi, Y.J. (2007). ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences. Nucl. Acids Res. 35, W159-162. DOI |
20 | Lee, B., Kim, T., Kim, S.K., Lee, K.H., and Lee, D. (2007). Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications. Nucl. Acids Res. 35, D47-50. DOI |