Browse > Article
http://dx.doi.org/10.5808/GI.2008.6.2.064

KRDD: Korean Rice Ds-tagging Lines Database for Rice (Oryza sativa L. Dongjin)  

Kim, Chang-Kug (Bioinformatics Division, National Institute of Agricultural, Biotechnology (NIAB))
Lee, Myung-Chul (Cell and Genetics Division, NIAB)
Ahn, Byung-Ohg (Cell and Genetics Division, NIAB)
Yun, Doh-Won (Cell and Genetics Division, NIAB)
Yoon, Ung-Han (Cell and Genetics Division, NIAB)
Suh, Seok-Cheol (Cell and Genetics Division, NIAB)
Eun, Moo-Young (Cell and Genetics Division, NIAB)
Hahn, Jang-Ho (Bioinformatics Division, National Institute of Agricultural, Biotechnology (NIAB))
Publication Information
Genomics & Informatics / v.6, no.2, 2008 , pp. 64-67 More about this Journal
Abstract
The Korean Rice Ds-tagging lines Database (KRDD) is designed to provide information about Ac/Ds insertion lines and activation tagging lines using japonica rice. This database has provided information on 18,158 Ds lines, which includes the ID, description, photo image, sequence information, and gene characteristics. The KRDD is visualized using a web-based graphical view, and anonymous users can query and browse the data using the search function. It has four major menus of web pages: (i) a Blast Search menu of a mutant line; Blast from rice Ds-tagging mutant lines; (ii) a primer design tool to identify genotypes of Ds insertion lines; (iii) a Phenotype menu for Ds lines, searching by identification name and phenotype characteristics; and (iv) a Management menu for Ds lines.
Keywords
Ac/Ds database; Ds phenotype; Ds-tagging line; insertion line; KRDD;
Citations & Related Records
연도 인용수 순위
  • Reference
1 An, S., Park, S., Jeong, D.H., et al. (2003). Generation and analysis of end sequence database for T-DNA tagging lines in rice. Plant. Physiology 133, 2040-2047.   DOI   ScienceOn
2 Kim, C.M., Piao, H.L., Park, S.J., Chon, N.S., Je, B.I., Sun, B., Park, S.H., Park, J.Y., Lee, E.J., Kim, M.J., Lee, K.H., Lee, Y.S., Lee, J.J., Won, Y.J., Yi, G.H., Nam, M.H., Cha, Y.S., Yun, D.W., Eun, M.Y., and Han, C.D. (2004). Rapid, large-scale generation of Ds transposant lines and analysis of the Ds insertion sites in rice. Plant J. 39, 252-263.   DOI   ScienceOn
3 Greco, R., Ouwerkerk, P.B., De Kam, R.J., Sallaud, C., Favalli, C., Colombo, L., Guiderdoni, E., Meijer, A.H., Hoge Dagger, J.H., and Pereira, A. (2003). Transpositional behaviour of an Ac/Ds system for reverse genetics in rice. Theor. Appl. Genet. 108, 10-24.   DOI   ScienceOn
4 Park, S.H., Jun, N.S., Kim, C.M., Oh, T.Y., Huang, J., Xuan, Y.J., Park, S.J., Je, B.I., Piao, H.L., Park, S.H., Cha, Y.S., Ahn, B.O., Ji, H.S., Lee, M.C., Suh, S.C., Nam, M.H., Eun, M.Y., Yi, G.H., Yun, D.W., and Han. C.D. (2007). Analysis of gene-trap Ds rice populations in Korea. Plant Molecular Biology 65, 373-384.   DOI
5 Keller, B., and Feuillet, C. (2000). Colinearity and gene density in grass genomes. Trends. Plant Sci. 5, 246-251.   DOI   ScienceOn
6 Parinov, S., and Sundaresan, V. (2000). Functional genomics in Arabidopsis : large-scale insertional mutagenesis complements the genome sequencing project. Curr. Opin. Biotechnol. 11, 157-161.   DOI   ScienceOn
7 Jeong, D.H., An, S.Y., Park, S.H., Kang, H.G., Park, G.G., Kim, S.R., Sim, J.Y., Kim, Y.O., Kim, M.K., Kim, J.W., Shin, M.S., Jung, M.Y., and An, G.H. (2006). Generation of a flanking sequence-tag database for activation-tagging lines in japonica rice. Plant J. 45, 123-132.   DOI   ScienceOn
8 Goff, S.A., Ricke, D., Lan, T.H., et al. (2002). A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296, 92-100.   DOI   ScienceOn
9 Sasaki, T., Matsumoto, T., Antonio, B.A., and Nagamura, Y. (2005). From mapping to sequencing, post-sequencing and beyond. Plant. Cell Physiol. 46, 3-13.   DOI   ScienceOn
10 Enoki, H., Izawa, T., Kawahara, M., Komatsu, M., Koh, S., Kyozuka, J., and Shimamoto, K. (1999). Ac as a tool for the functional genomics of rice. Plant. J. 19, 605-613.   DOI   ScienceOn