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HapAnalyzer: Minimum Haplotype Analysis System for Association Studies  

Jung, Ho-Youl (Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health)
Park, Jung-Sun (Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health)
Park, Yun-Ju (Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health)
Kim, Young-Jin (Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health)
Kimm, Kuchan (Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health)
Koh, InSong (Division of Epidemiology and Bioinformatics, National Genome Research Institute, National Institute of Health)
Publication Information
Genomics & Informatics / v.2, no.2, 2004 , pp. 107-109 More about this Journal
Abstract
HapAnalyzer is an analysis system that provides minimum analysis methods for the SNP-based association studies. It consists of Hardy-Weinberg equilibrium (HWE) test, linkage disequilibrium (LD) computation, haplotype reconstruction, and SNP (or haplotype)-phenotype association assessment. It is well suited to a case-control association study for the unrelated population.
Keywords
SNP; haplotype; haplotype block; disease association;
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