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Interpretation of Association Networks among Protein Sequence Motifs  

Kam, Hye J. (Bio-Information System Laboratory in Department of BioSystems, Korea Advanced Institute of Science and Technology)
Lee, Junehawk (Bio-Information System Laboratory in Department of BioSystems, Korea Advanced Institute of Science and Technology)
Lee, Doheon (Bio-Information System Laboratory in Department of BioSystems, Korea Advanced Institute of Science and Technology)
Lee, Kwang H. (Bio-Information System Laboratory in Department of BioSystems, Korea Advanced Institute of Science and Technology)
Abstract
Every protein can be characterized by either a distinct motif or a combination of motifs. Nevertheless, little is known about the relationships among (more than two) the motifs. Some of the proteins in the world are share motifs for evolutional or other biological benefits - they can save energy, time and resource for controlling and managing a variety of proteins. In some cases of motifs, the tendency is quite common and they can act the 'hub' motif of a network of the motif associations. The hubs are structurally and functionally important in themselves and also important in disease-related mutations. They will be highly resistant mutation to conserve their functions. But, in case of the a rare mutation, mutations on the position of hub can more easily cause fatal diseases.
Keywords
Association; Association networks; Motif; Rule mining;
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  • Reference
1 Horng, J.-T. et al., (2002). Study of Motif Correlation in Protein by DataMining. METMBS 345-350
2 Han, J. and Kamber, M. (2001). Data Mining: Concepts and Techniques (Simon Fraser univ.) 225-228, 260-261
3 Attwood, et al., (2003). PRINTS and its automatic supplement, preprints. NucleicAcids Research 31,400-402   DOI
4 Mulder, N.J. et al., (2003). The InterPro Database - 2003 brings increased coverage andnewfeatures. Nucleic Acids Research 31,315-318   DOI   ScienceOn
5 Deng, M. et al., (2002). Inferring domain-domain interactions from protein-protein interactions. Genomic research 12,1540-1548   DOI   ScienceOn
6 Bateman, A.et al., (2002). The Pfam Protein Families Database. Nucleic AcidsResearch 30, 276-280   DOI   ScienceOn
7 Flaquet, L. et al., (2002). The PROSITE database, its status in 2002. Nucleic Acid Research 30, 235-238   DOI   ScienceOn
8 Letunic, I. et al., (2002). Recent improvements to the SMART domain-based sequence annotation resource. Nucleic Acids Research 30,242-244   DOI   ScienceOn