Comparative Transcriptome Analysis of Caryophyllene-Treated Helicobacter pylori |
Woo, Hyun Jun
(Department of Clinical Laboratory Science, Semyung University)
Yang, Ji Yeong (Division of Crop Foundation, National Institute of Crop Science (NICS), Rural Development Administration (RDA)) Kwon, Hye Jin (Department of Biomedical Laboratory Science, College of Health Sciences, Yonsei University) Kim, Hyun Woo (Department of Biomedical Laboratory Science, College of Health Sciences, Yonsei University) Kim, Sa-Hyun (Department of Clinical Laboratory Science, Semyung University) Kim, Jong-Bae (Department of Biomedical Laboratory Science, College of Health Sciences, Yonsei University) |
1 | Woo HJ, Yang JY, Lee MH, Kim HW, Kwon HJ, Park M, et al. 2020. Inhibitory effects of β-caryophyllene on Helicobacter pylori infection in vitro and in vivo. Int. J. Mol. Sci. 21: 1008. DOI |
2 | Kamatou GP, Vermaak I, Viljoen AM. 2012. Eugenol--from the remote Maluku Islands to the international market place: a review of a remarkable and versatile molecule. Molecules 17: 6953-6981. DOI |
3 | Boonjakuakul JK, Canfield DR, Solnick JV. 2005. Comparison of Helicobacter pylori virulence gene expression in vitro and in the rhesus macaque. Infect. Immun. 73: 4895-4904. DOI |
4 | Merino E, Flores-Encarnacion M, Aguilar-Gutierrez GR. 2017. Functional interaction and structural characteristics of unique components of Helicobacter pylori T4SS. FEBS J. 284: 3540-3549. DOI |
5 | Schmidt E, Bail S, Friedl SM, Jirovetz L, Buchbauer G, Wanner J, et al. 2010. Antimicrobial activities of single aroma compounds. Nat. Prod. Commun. 5: 1365-1368. |
6 | Choe D, Palsson B, Cho B-K. 2020. STATR: A simple analysis pipeline of Ribo-Seq in bacteria. J. Microbiol. 58: 217-226. DOI |
7 | Kwok T, Zabler D, Urman S, Rohde M, Hartig R, Wessler S, et al. 2007. Helicobacter exploits integrin for type IV secretion and kinase activation. Nature 449: 862-866. DOI |
8 | Terradot L, Waksman G. 2011. Architecture of the Helicobacter pylori Cag-type IV secretion system. FEBS J. 278: 1213-1222. DOI |
9 | Kwon HJ, Lee MH, Kim HW, Yang JY, Woo HJ, Park M, et al. 2020. Riboflavin inhibits growth of Helicobacter pylori by down-regulation of polA and dnaB genes. Biomed. Sci. Lett. 26: 288-295. DOI |
10 | Niehues M, Stark T, Keller D, Hofmann T, Hensel A. 2011. Antiadhesion as a functional concept for prevention of pathogens: NPhenylpropenoyl-L-amino acid amides as inhibitors of the Helicobacter pylori BabA outer membrane protein. Mol. Nutr. Food Res. 55: 1104-1117. DOI |
11 | Kim SH, Park M, Woo H, Tharmalingam N, Lee G, Rhee KJ, et al. 2012. Inhibitory effects of anthocyanins on secretion of Helicobacter pylori CagA and VacA toxins. Int. J. Med. Sci. 9: 838-842. DOI |
12 | Kim SH, Lee MH, Park M, Woo HJ, Kim YS, Tharmalingam N, et al. 2018. Regulatory effects of black rice extract on Helicobacter pylori infection-induced apoptosis. Mol. Nutr. Food Res. 62: 1700586. DOI |
13 | Lee MH WH, Park M, Moon C, Eom YB, Kim SH, Kim JB. 2016. Plumbagin inhibits expression of virulence factors and growth of Helicobacter pylori. Microbiol. Biotechnol. Lett. 44: 218-226. DOI |
14 | Fan E, Chauhan N, Udatha DB, Leo JC, Linke D. 2016. Type V secretion systems in bacteria. Microbiol Spectr. 4. doi: 10.1128/microbiolspec.VMBF-0009-2015. DOI |
15 | Song MS, Pham PT, Olson M, Carter JR, Franden MA, Schaaper RM, et al. 2001. The δ and δ' subunits of the DNA polymerase III holoenzyme are essential for initiation complex formation and processive elongation. J. Biol. Chem. 276: 35165-35175. DOI |
16 | de Souza Mendes C, de Souza Antunes AM. 2013. Pipeline of known chemical classes of antibiotics. Antibiotics (Basel) 2: 500-534. DOI |
17 | Goh KL, Chan WK, Shiota S, Yamaoka Y. 2011. Epidemiology of Helicobacter pylori infection and public health implications. Helicobacter 16 Suppl 1: 1-9. |
18 | Benjamini Y, Hochberg Y. 1995. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Royal Statistical Soc. series B (Methodological) 57: 289-300. DOI |
19 | Tharmalingam N, Kim SH, Park M, Woo HJ, Kim HW, Yang JY, et al. 2014. Inhibitory effect of piperine on Helicobacter pylori growth and adhesion to gastric adenocarcinoma cells. Infect. Agent Cancer 9: 43. DOI |
20 | Warren JR, Marshall B. 1983. Unidentified curved bacilli on gastric epithelium in active chronic gastritis. Lancet 1: 1273-1275. |
21 | Boquet P, Ricci V. 2012. Intoxication strategy of Helicobacter pylori VacA toxin. Trends Microbiol. 20: 165-174. DOI |
22 | Crevelin EJ, Caixeta SC, Dias HJ, Groppo M, Cunha WR, Martins CH, et al. 2015. Antimicrobial activity of the essential oil of Plectranthus neochilus against cariogenic bacteria. Evid. Based Complement. Alternat. Med. 2015: 102317. |
23 | Marshall BJ, Warren JR. 1984. Unidentified curved bacilli in the stomach of patients with gastritis and peptic ulceration. Lancet 1: 1311-1315. DOI |
24 | Wang F, Meng W, Wang B, Qiao L. 2014. Helicobacter pyloriinduced gastric inflammation and gastric cancer. Cancer Lett. 345: 196-202. DOI |
25 | de Martel C, Ferlay J, Franceschi S, Vignat J, Bray F, Forman D, et al. 2012. Global burden of cancers attributable to infections in 2008: a review and synthetic analysis. Lancet Oncol. 13: 607-615. DOI |
26 | Salama NR, Hartung ML, Muller A. 2013. Life in the human stomach: persistence strategies of the bacterial pathogen Helicobacter pylori. Nat. Rev. Microbiol. 11: 385-399. DOI |
27 | Amieva M, Peek RM, Jr. 2016. Pathobiology of Helicobacter pyloriinduced gastric cancer. Gastroenterology 150: 64-78. DOI |
28 | de Almeida Borges VR, Ribeiro AF, de Souza Anselmo C, Cabral LM, de Sousa VP. 2013. Development of a high performance liquid chromatography method for quantification of isomers beta-caryophyllene and alpha-humulene in copaiba oleoresin using the Box-Behnken design. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 940: 35-41. DOI |
29 | Ghelardini C, Galeotti N, Di Cesare Mannelli L, Mazzanti G, Bartolini A. 2001. Local anaesthetic activity of beta-caryophyllene. Farmaco 56: 387-389. DOI |
30 | Nikolic M, Stojkovic D, Glamoclija J, Ciric A, Markovic T, Smiljkovic M, et al. 2015. Could essential oils of green and black pepper be used as food preservatives? J. Food Sci. Technol. 52: 6565-6573. DOI |
31 | Venturi CR, Danielli LJ, Klein F, Apel MA, Montanha JA, Bordignon SA, et al. 2015. Chemical analysis and in vitro antiviral and antifungal activities of essential oils from Glechon spathulata and Glechon marifolia. Pharm. Biol. 53: 682-688. DOI |
32 | Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, et al. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28: 511-515. DOI |
33 | Trapnell C, Roberts A, Goff L, Pertea G, Kim D, Kelley DR, et al. 2012. Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nat. Protoc. 7: 562-578. DOI |
34 | Nitharwal RG, Verma V, Dasgupta S, Dhar SK. 2011. Helicobacter pylori chromosomal DNA replication: current status and future perspectives. FEBS Lett. 585: 7-17. DOI |
35 | Reece RJ, Maxwell A. 1991. DNA gyrase: structure and function. Crit. Rev. Biochem. Mol. Biol. 26: 335-375. DOI |
![]() |