Browse > Article
http://dx.doi.org/10.4014/mbl.1802.02013

Molecular Cloning and Overexpression of Phytoene Desaturase (CrtI) from Paracoccus haeundaensis  

Choi, Seong-Seok (Department of Microbiology, College of Natural Sciences, Pukyong National University)
Seo, Yong Bae (Department of Microbiology, College of Natural Sciences, Pukyong National University)
Lim, Han Kyu (Department of Marine and Fisheries Resources, College of Natural Sciences, Mokpo National University)
Nam, Soo-Wan (Division of Applied Bioengineering, Biomedical Engineering and Biotechnology Major, College of Engineering, Dong-Eui University)
Kim, Gun-Do (Department of Microbiology, College of Natural Sciences, Pukyong National University)
Publication Information
Microbiology and Biotechnology Letters / v.46, no.2, 2018 , pp. 145-153 More about this Journal
Abstract
Among the carotenoid biosynthesis genes, crtI gene encodes the phytoene desaturase (CrtI) enzyme, and phytoene desaturase convert phytoene to lycopene. Phytoene desaturase is involved in the dehydrogenation reaction, in which four single bonds in the phytoene are introduced into a double bond, eliminating eight hydrogen atoms in the process. Phytoene desaturase is one of the key regulating enzyme in carotenoid biosynthetic pathway of various carotenoid biosynthetic organisms. The crtI gene in genomic DNA of Paracoccus haeundaensis was amplified and cloned into a T-vector to analyze the nucleotide sequence. As a result, the crtI gene coding for phytoene desaturase from P. haeundaensis consists of 1,503 base pairs encoding 501 amino acids residues. An expression plasmid containing the crtI gene was constructed, and Escherichia coli cells containing this plasmid produced the recombinant protein of approximately 55 kDa, equivalent to the molecular weight of phytoene desaturase. The expressed protein in cell lysate showed enzymatic activity similar to phytoene desaturase. Phytoene and lycopene were analyzed by HPLC and measured at wavelength of 280 nm and 470 nm, respectively. The $K_m$ values for phytoene and NADPH were $11.1{\mu}M$ and $129.3{\mu}M$, respectively.
Keywords
Carotenoid; lycopene; Paracoccus haeundaensis; phytoene; phytoene desaturase;
Citations & Related Records
Times Cited By KSCI : 3  (Citation Analysis)
연도 인용수 순위
1 Heider SA, Petra PW, Netzer R, Stafnes M, Brautaset T, Wendisch VF. 2014. Production and glucosylation of $C_{50}$ and $C_{40}$ carotenoids by metabolically engineered Corynebacterium glutamicum. Appl. Microbiol. Biotechnol. 98: 1223-1235.   DOI
2 Beyer P, Mayer M, Kleinig H. 1989. Molecular oxygen and the state of geometric isomerism of intermediates are essential in the carotene desaturation and cyclization reactions in daffodil chromoplasts. Eur. J. Biochem. 184: 141-150.   DOI
3 Li F, Murillo C, Wurtzel ET. 2007. Maize Y9 encodes a product essential for 15-cis-zeta-carotene isomerization. Plant Physiol. 144: 1181-1189.   DOI
4 Isaacson T, Ronen G, Zamir D, Hirschberg J. 2002. Cloning of tangerine from tomato reveals a carotenoid isomerase essential for the production of ${\beta}$-carotene and xanthophylls in plants. Plant Cell 14: 333-342.   DOI
5 Liang C, Zhao F, Wei W, Wen Z, Qin S. 2006. Carotenoid biosynthesis in cyanobacteria structural and evolutionary scenarios based on comparative genomics. Int. J. Biol. Sci. 18: 197-207.
6 Ehrenshaft M, Daub ME. 1994. Isolation, sequence, and characterization of the Cercospora nicotianae phytoene dehydrogenase gene. Appl. Environ. Microbiol. 60: 2766-2771.
7 Zhang W, Hu X, Wang L, Wang X. 2014. Reconstruction of the carotenoid biosynthetic pathway of Cronobacter sakazakii BAA894 in Escherichia coli. PLoS One 9: e86739.   DOI
8 Jeong TH, Ji K, Kim YT. 2013. Overexpression and characterization of lycopene cyclase (CrtY) from marine bacterium Paracoccus haeundaensis. J. Microbiol. Biotechnol. 23: 144-148.   DOI
9 Yokoyama A, Izumida H, Miki W. 1994. Production of astaxanthin and 4-ketozeaxanthin by the marine bacterium, Agrobacterium aurantiacum. Biosci. Biotechnol. Biochem. 58: 1842-1844.   DOI
10 Lee W, Lee DG. 2014, Lycopene-induced hydroxyl radical causes oxidative DNA damage in Escherichia coli. J. Microbiol. Biotechnol. 24: 1232-1237.   DOI
11 Bubrick P. 1991. Production of astaxanthin from Haematococcus. Bioresour. Technol. 38: 237-239.   DOI
12 Tsubokura A, Yoneda H, Mizuta H. 1999. Paracoccus carotinifaciens sp. nov., a new aerobic gram-negative astaxanthin-producing bacterium. Int. J. Syst. Evol. Microbiol. 49: 277-282.
13 Ludmila T, Peter S, Ivo S, Zdena P, Cathrin S, Susanne V, et al. 2005. Reclassification of strain CCM 132, previously classified as Kocuria varians, as Kocuria carniphila sp. nov. Int. J. Syst. Evol. Microbiol. 55: 139-142.   DOI
14 Seo YB, Kim DE, Kim GD, Kim HW, Nam SW, Kim YT, et al. 2009. Kocuria gwangalliensis sp. nov., an actinobacterium isolated from seawater. Int. J. Syst. Evol. Microbiol. 59: 2769-2772.   DOI
15 Harker M, Hirschberg J, Oren A. 1998. Paracoccus marcusii sp. nov., an orange gram-negative coccus. Int. J. Syst. Evol. Microbiol. 48: 543-548.
16 Miller MW, Yoneyama M, Soneda M. 1976. Phaffia, a new yeast genus in the Deuteromycotina (Blastomycetes). Int. J. Syst. Bacteriol. 26: 286-291.   DOI
17 Linnewiel-Hermoni K, Khanin M, Danilenko M, Zango G, Amosi Y, Levy J, et al. 2015. The anti-cancer effects of carotenoids and other phytonutrients resides in their combined activity. Arch. Biochem. Biophys. 572: 28-35.   DOI
18 Phadwal K. 2005. Carotenoid biosynthetic pathway: molecular phylogenies and evolutionary behavior of crt genes in eubacteria. Gene. 345: 35-43.   DOI
19 Lee JH, Kim YT. 2006. Cloning and characterization of the astaxanthin biosynthesis gene cluster from the marine bacterium Paracoccus haeundaensis. Gene 370: 86-95.   DOI
20 Armstrong GA, Alberti M, Leach F, Hearst JE. 1989. Nucleotide sequence, organization, and nature of the protein products of the carotenoid biosynthesis gene cluster of Rhodobacter capsulatus. Mol. Gen. Genet. 216: 254-268.   DOI
21 Stahl W, Sies H. 2003. Antioxidant activity of carotenoids. Mol. Aspects Med. 24: 345-351.   DOI
22 Horvitz MA, Simon PW, Tanumihardjo SA. 2004. Lycopene and beta-carotene are bioavailable from lycopene 'red' carrots in humans. Eur. J. Clin. Nutr. 58: 803-811.   DOI
23 Lee JH, Kim YS, Choi TJ, Lee WJ, Kim YT. 2004. Paracoccus haeundaensis sp. nov., a gram-negative, halophilic, astaxanthin-producing bacterium. Int. J. Syst. Evol. Microbiol. 54: 1699-1702.   DOI
24 Harada H, Misawa N. 2012. Novel approach in the biosynthesis of functional carotenoids in Escherichia coli. Methods. Mol. Biol. (Clifton, NJ) 892: 133-141.
25 Cahoon LB, Halkides CJ, Song BK, Williams CM, Dubay GR, Fries A, et al. 2012. Swine waste as a source of natural products: A carotenoid antioxidant. AS 3: 806-815.   DOI
26 Seo YB, Choi SS, Nam SW, Lee JH, Kim YT. 2009. Cloning and characterization of the zeaxanthin glucosyltransferase gene (crtX) from the astaxanthin-producing marine bacterium, Paracoccus haeundaensis. J. Microbiol. Biotechnol. 19: 1542-1546.   DOI
27 Hammerich L, Tacke F. 2013. Eat more carrots? Dampening cell death in ethanol-induced liver fibrosis by ${\beta}$-carotene Hepatobiliary. Surg. Nutr. 2: 248-251.
28 Sandmann G. 2009. Evolution of carotene desaturation: the complication of a simple pathway. Arch. Biochem. Biophys. 483: 169-174.   DOI
29 Stice CP, Wang XD. 2013. Carotenoids and alcoholic liver disease Hepatobiliary. Surg. Nutr. 2: 244-247.
30 Scolnik PA, Bartley GE. 1993. Phytoene desaturase from Arabidopsis. Plant Physiol. 103: 1475.   DOI
31 Aracri B, Bartley GE, Scolnik PA, Giuliano G. 1994. Sequence of the phytoene desaturase locus of tomato. Plant Physiol. 106: 789.   DOI
32 Adamczak R, Porollo A, Meller J. 2005. Combining prediction of secondary structure and solvent accessibility in proteins. Proteins 59: 467-475.   DOI