Identification and Characterization of an Agarase- and Xylanse-producing Catenovulum jejuensis A28-5 from Coastal Seawater of Jeju Island, Korea |
Kim, Da Som
(Biological and Genetic Resources Assessment Division, National Institute of Biological Resources)
Jeong, Ga Ram (Biological and Genetic Resources Assessment Division, National Institute of Biological Resources) Bae, Chang Hwan (Biological and Genetic Resources Assessment Division, National Institute of Biological Resources) Yeo, Joo-Hong (Biological and Genetic Resources Assessment Division, National Institute of Biological Resources) Chi, Won-Jae (Biological and Genetic Resources Assessment Division, National Institute of Biological Resources) |
1 | Yan S, Yu M, Wang Y, Shen C, Zhang XH. 2011. Catenovulum agarivorans gen. nov., sp. nov., a peritrichously flagellated, chainforming, agar-hydrolysing gammaproteobacterium from seawater. Int. J. Syst. Evol. Microbiol. 61: 2866-2873. DOI |
2 | Li DQ, Zhou YX, Liu T, Chen GJ, Du ZJ. 2015. Catenovulum maritimus sp. nov., a novel agarolytic gammaproteobacterium isolated from the marine alga Porphyra yezoensis Ueda (AST58-103), and emended description of the genus Catenovulum. Antonie Van Leeuwenhoek. 108: 427-434. DOI |
3 | Biely P. 1985. Microbial xylanolytic systems. Trends Biotechnol. 11: 286-290. |
4 | Chi WJ, Park JS, Kwak MJ, Kim JF, Chang YK, Hong SK. 2013. Isolation and characterization of a novel agar-degrading marine bacterium, Gayadomonas joobiniege gen, nov, sp. nov., from the Southern Sea, Korea. J. Microbiol. Biotechnol. 23: 1509-1518. DOI |
5 | Kim JH, Choi BH, Jo M, Kim SC, Lee PC. 2014. Flavobacterium faecale sp. nov., an agarase-producing species isolated from stools of Antarctic penguins. Int. J. Syst. Evol. Microbiol. 64: 2884-2890. DOI |
6 | Amel BD, Nawel B, Khelifa B, Mohammed G, Manon J, Salima KG, et al. 2016. Characterization of a purified thermostable xylanase from Caldicoprobacter algeriensis sp. nov. strain TH7C1(T). Carbohydr. Res. 419: 60-68. DOI |
7 | Morais CG, Lara CA, Oliveira ES, Peter G, Dlauchy D, Rosa CA. 2015. Spencermartinsiella silvicola sp. nov., a yeast species isolated from rotting wood. Int. J. Syst. Evol. Microbiol. doi:10.1099/ijsem.0.000764. DOI |
8 | Lane DJ. 1991. 16S/23S rRNA sequencing. pp. 115-175. In Stackebrandt E, Goodfellow M (eds.), Nucleic acid techniques in bacterial systematics. Chichester, United Kingdom: John Wiley and Sons. |
9 | Mario LP, Francisco R-V. 2014. The family Alteromonadaceae. The Prokaryotes. pp. 69-92. Springer-Verlag Berlin Heidelberg, New York. |
10 | Chi WJ, Chang YK, Hong SK. 2012. Agar degradation by microorganisms and agar-degrading enzymes. Appl. Microbiol. Biotechnol. 94: 917-930. DOI |
11 | Kobayashi R, Takisada M, Suzuki T, Kirimura K, Usami S. 1997. Neoagarobiose as a novel moisturizer with whitening effect. Biosci. Biotechnol. Biochem. 61: 162-163. DOI |
12 | Christakopoulos P, Katapodis P, Kalogeris E, Kekos D, Macris BJ, Stamatis H, et al. 2003. Antimicrobial activity of acidic xylo-oligosaccharides produced by family 10 and 11 endoxylanases. Int. J. Biol. Macromol. 31: 171-175. DOI |
13 | Van Trappen S, Tan TL, Yang J, Mergaert J, Swings J. 2004. Altermonas stellipolaris sp. nov., a novel, budding, prosthecate bacterium from Antarctic seas, and emended description of the genus Alteromonas. Int. J. Syst. Evol. Microbiol. 54: 1157-1163. DOI |
14 | Kallel F, Driss D, Chaabouni SE, Ghorbel R. 2015. Biological activities of xylooligosaccharides generated from garlic straw xylan by purified xylanase from Bacillus mojavensis UEB-FK. Appl. Biochem. Biotechnol. 175: 950-964. DOI |
15 | Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425. |
16 | Miller L, Berger T. 1985. Bacterial identification by gas chromatography of whole cell fatty acid. Hewlett-Packard Application note. pp. 228-241. |
17 | Mesbah M, Premachandran U, Whitman WB. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167. DOI |
18 | Temuujin U, Chi WJ, Lee SY, Chang YK, Hong SK. 2011. Overexpression and biochemical characterization of DagA from Streptomyces coelicolor A3(2): an endo-type -agarase producing neoagarotetraose and neoagarohexaose. Appl. Microbiol. Biotechnol. 92: 749-759. DOI |
19 | Oh C, De Zoysa M, Kwon YK, Heo SJ, Affan A, Jung WK, et al. 2011. Complete genome sequence of the agarase-producing marine bacterium strain s89, representing a novel species of the genus Alteromonas. J. Bacteriol. 193: 5538. DOI |
20 | Shi X, Yu M, Yan S, Dong S, Zhang XH. 2012. Genome sequence of the thermostable-agarase-producing marine bacterium Catenovulum agarivorans YM01(T), which reveals the presence of a series of agarase-encoding genes. J. Bacteriol. 194: 5484. DOI |
21 | Zhang P, Rui J, Du Z, Xue C, Li X, Mao X. 2016. Complete genome sequence of Agarivorans giluvs (T), and agarase-producing bacterium isolated from seaweed. J. Biotechnol. 219: 22-23. DOI |