Browse > Article
http://dx.doi.org/10.4014/kjmb.1304.04001

Enhanced Production of Endo-${\beta}$-1,4-xylanase from Paenibacillus sp. HX-1 Newly Isolated from Soil Samples at Hambak Mountain in Yongin city, Korea  

Chi, Won-Ja (Division of Bioscience and Bioinformatics, Myongji University)
Kim, Jonghee (Department of Food and Nutrition, Seoil College)
Hong, Soon-Kwang (Division of Bioscience and Bioinformatics, Myongji University)
Publication Information
Microbiology and Biotechnology Letters / v.41, no.3, 2013 , pp. 263-271 More about this Journal
Abstract
A xylanase-producing bacterium was isolated from a soil sample collected in Yongin city, Korea. The strain was aerobic and gram positive, and grew between pH 5.0 and 11.0, forming a yellow-colored colony. The strain was classified as a novel subspecies bacterium of Paenibacillus barcinonensis by 16S rRNA gene sequence similarity, phylogenetic analysis, phenotypic, and biochemical characteristics, and thus named Paenibacillus sp. HX-1. This strain produced extracellular endo-${\beta}$-1,4-xylanase, and the best xylanolytic activity (205.17 unit/ml) was obtained at 96 h in an optimized TNX medium containing 1% (w/v) bacto tryptone, 1% (w/v) NaCl, and 0.7% (w/v) beechwood xylan at pH 7.0, $37^{\circ}C$ and 200 rpm. The endo-${\beta}$-1,4-xylanase produced by the strain HX-1 yielded xylobiose as the end product from beechwood xylan hydrolysis. The enzyme exhibited optimum pH and temperature at pH 7.0 and $45^{\circ}C$, respectively. The remarkable enhancing effect of the TNX medium on xylanase production by HX-1, in spite of its simple formula, may have great advantages for industrial applications of xylanase.
Keywords
Xylanase; endo-${\beta}$-1,4-xylanase; xylobiose; Paenibacillus sp. HX-1;
Citations & Related Records
Times Cited By KSCI : 2  (Citation Analysis)
연도 인용수 순위
1 Chun JS, Lee JH, Jung YY, Kim MJ, Kim SI, Kim BK, et al. 2007. Extaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int. J. Syst. Evol. Microbiol. 57: 2259-2261.   DOI
2 Ali MK, Rudolph FB, Bennett GN. 2005. Characterization of thermostable Xyn10A enzyme from mesophilic Clostridium acetobutylicum ATCC 824. J. Ind. Microbiol. Biotechnol. 32: 12-18.   DOI
3 Amaya-Delgado L, Mejia-Castillo T, Santiago-Hernandez A, Vega-Estrada J, Amelia FGS, Xoconostle-Cazares B, et al. 2010. Cloning and expression of a novel, moderately thermostable xylanase-encoding gene (Cfl xyn11A) from Cellulomonas flavigena. Bioresour. Technol. 101: 5539-5545.   DOI
4 Beg QK, Kapoor M, Mahajan L, Hoondal GS. 2001. Microbial xylanase and their industrial applications: A review. Appl. Microbiol. Biotechnol. 56: 326-338.   DOI
5 Chi W-J, Park DY, Park J-S, Hong S-K. 2012. Isolation and characterization of a xylanolytic bacterium, Bacillus sp. MX47. Korean J. Microbiol. Biotechnol. 40: 419-423.   DOI
6 Chi W-J, Park DY, Chang Y-K, Hong S-K. 2012. A novel alkaliphilic xylanase from the newly isolated mesophilic Bacillus sp. MX47: production, purification, and characterization. Appl. Biochem. Biotechnol. 168: 899-909.   DOI
7 Felsenstein J. 2009. PHYLIP (phylogeny inference package), v3.69. Distributed by the author. Department of Genome Sciences. University of Washington, Seattle, USA.
8 Hall TA. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41: 95-98.
9 Heo S, Kwak J, Oh HW, Park DS, Bae KS, Shin DH, et al. 2006. Characterization of an extracellular xylanase in Paenibacillus sp. HY-8 isolated from an herbivorous longicorn beetle. J. Microbiol. Biotechnol. 16: 1753-1759.
10 Ito Y, Tomita T, Roy N, Nakano A, Sugawara-Tomita N, Watanabe S, et al. 2003. Cloning, expression, and cell surface localization of Paenibacillus sp. strain W-61 xylanase 5, a multidomain xylanase. Appl. Environ. Microbiol. 69: 6969- 6978.   DOI
11 Komagata K, Suzuki K. 1987. Lipid and cell-wall analysis in bacterial systematic. Methods Microbiol. 19: 161-207.
12 Kim DY, Han MK, Park DS, Lee JS, Oh HW, Shin DH, et al. 2009. Novel GH10 xylanase, with a fibronectin type 3 domain, from Cellulosimicrobium sp. strain HY-13, a bacterium in the gut of Eisenia fetida. Appl. Environ. Microbiol. 75: 7275-7279.   DOI
13 Kimura M. 1983. The neutral theory of molecular evolution. Cambridge Univesity Press, UK.
14 Ko CH, Tsai CH, Tu J, Lee HY, Kua LT, Kuod PA, et al. 2010. Molecular cloning and characterization of a novel thermostable xylanase from Paenibacillus campinasensis BL11. Process Biochem. 45: 1638-1644.   DOI
15 Mesbah M, Premachandran U, Whitman WB. 1989. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 39: 159-167.   DOI
16 Miller GL. 1959. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal. Chem. 31: 426-428.   DOI
17 Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.   DOI
18 Miller L, Berger T. 1985. Bacterial identification by gas chromatography of whole cell fatty acid. Hewlett-Packard Application note. pp. 228-241.
19 Ratanakhanokchai K, Kyu KL, Tanticharoen M. 1999. Purification and properties of a xylan-binding endoxylanase from alkaliphilic Bacillus sp. strain K-1. Appl. Environ. Microbiol. 65: 694-697.
20 Rattiya W, Pason P, Kyu KL, Sakka K, Kosugi A, Mori Y, et al. 2009. Cloning, sequencing, and expression of the gene encoding a multidomain endo-$\beta$-1,4-xylanase from Paenibacillus curdlanolyticus B-6, and characterization of the recombinant enzyme. J. Microbiol. Biotechnol. 19: 277-285.
21 Sánchez MM, Fritze D, Blanco A, Spröer C, Tindall BJ, Schumann P, et al. 2005. Paenibacillus barcinonensis sp. nov., a xylanase-producing bacterium isolated from a rice field in the Ebro River delta. Int. J. Syst. Evol. Microbiol. 55: 935-939.   DOI
22 Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
23 Sasser M. 1997. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Newark, DE:MIDI Inc.
24 Valenzuela SV, Daiz P, Pastor FIJ. 2010. Recombinant expression of an alkali stable GH 10 xylanase from Paenibacillus barcinonensis. J. Agric. Food Chem. 58: 4814-4818.   DOI
25 Watanabe S, Viet DN, Kaneko J, Kamio Y, Yoshida S. 2008. Cloning, expression and transglycosylation reaction of Paenibacillus sp. strain W-61 xylanase1. Biosci. Biotechnol. Biochem. 72: 951-958.   DOI
26 Zhang J, Matti SA, Terhi P, Ming T, Maija T, Liisa V. 2011. Thermostable recombinant xylanases from Nonomuraea flexuosa and Thermoascus aurantiacus show distinct properties in the hydrolysis of xylans and pretreated wheat straw. Biotechnol. Biofuels 4: 12-25.   DOI
27 Zheng H, Liu Y, Liu X, Wang J, Han Y, Lu F. 2012. Isolation, purification, and characterization of a thermostable xylanase from a novel strain, Paenibacillus campinasensis G1-1. J. Microbiol. Biotechnol. 22: 930-938.   DOI
28 Zhao Y, Meng K, Luo H, Yang P, Shi P, Huang H, et al. 2011. Cloning, expression, and characterization of a new xylanase from alkalophilic Paenibacillus sp. 12-11. J. Microbiol. Biotechnol. 21: 861-868.