Browse > Article
http://dx.doi.org/10.4014/kjmb.1207.07025

Analysis of Genomic Diversity of Endophytic Fungal Strains Isolated from the Roots of Suaeda japonica and S. maritima for the Restoration of Ecosystems in Buan Salt Marsh  

You, Young-Hyun (School of Life Sciences, College of National Sciences, Kyungpook National University)
Yoon, Hyeokjun (School of Life Sciences, College of National Sciences, Kyungpook National University)
Seo, Yeonggyo (School of Life Sciences, College of National Sciences, Kyungpook National University)
Kim, Miae (School of Life Sciences, College of National Sciences, Kyungpook National University)
Shin, Jae-Ho (School of Applied Biosciences, College of National Sciences, Kyungpook National University)
Lee, In-Jung (School of Applied Biosciences, College of National Sciences, Kyungpook National University)
Choo, Yeon-Sik (Department of Biology, College of National Sciences, Kyungpook National University)
Kim, Jong-Guk (School of Life Sciences, College of National Sciences, Kyungpook National University)
Publication Information
Microbiology and Biotechnology Letters / v.40, no.4, 2012 , pp. 287-295 More about this Journal
Abstract
Eighty-four endophytic fungal strains were isolated and identified from the roots of halophytes collected in Buan salt marsh. All halophyte samples, such as Suaeda japonica, and Suaeda maritima were isolated from Buan salt marsh. All endophytic fungi isolated were analyzed by sequences of internal transcribed spacer (ITS) containing ITS1, 5.8s and ITS2 region. All endophytic fungi expressed that fungal strains belong to eight orders; Pleosporales (45%), Eurotiales (27%), Incertae sedis (11%), Dothideales (6%), Capnodiales (5%), Hypocreales (5%), and Agaricales (1%). All endophytic fungi were confirmed at the genus level of Ascomycota and Basidiomycota, containing Alternaria, Ascomycota, Aspergillus, Aureobasidium, Cladosporium, Eupenicillium, Fusarium, Gibberella, Hypocrea, Lewia, Macrophoma, Penicillium, Peyronellaea, Phoma, Pleospora, Pleosporales, Pseudeurotium, Schizophyllum, and Talaromyces. Alternaria (21%) and Penicillium (13%) were the dominant endophytic fungal strains. In this study, endophytic fungal strains analyzed from S. japonica and S. maritime, Alternaria (21%), and Penicillium (13%) of Pleosporales and Eurotiales in halophytes were very abundant.
Keywords
Endophytic fungi; fungal diversity; halophyte; coastal salt marsh; Suaeda japonica; Suaeda maritima;
Citations & Related Records
Times Cited By KSCI : 7  (Citation Analysis)
연도 인용수 순위
1 Waller, F., B. Achatz, T. H. Baltruscha, J. Fodor, K. Becker, M. Fischer, T. Heier, R. Hckelhoven, C. Neumann, D. V. Wettstein, P. Franken, and K. H. Kogel. 2005. The endophytic fungus Piriformospora indica reprograms barley to saltstress tolerance, disease resistance, and higher yield. Proc. Natl. Acid. Sci. USA. 102: 13386-13391.   DOI   ScienceOn
2 Yamada, A., O. Takeo, D. Yosuke, and O. Masatake. 2001. Isolation of Tricholoma matsutake and T. bakamatsutake cultures from field-collected ectomycorrhizas. Mycoscience 42: 43-50.   DOI   ScienceOn
3 You, Y. H., H. Yoon, G. S. Lee, J. R. Woo, J. H. Shin, I. J. Lee, S. O. Rim, Y. S. Choo, and J. G. Kim. 2011. Diversity and plant growth-promotion of endophytic fungi isolated from the roots of plants in Dokdo islands. Kor. J. Life Sci. 21: 992-996.   DOI
4 You, Y. H., H. Yoon, J. R. Woo, Y. Seo, M. Kim, G. Lee, and J. G. Kim. 2012. Diversity of Endophytic Fungi from the Roots of Halophytes Growing in Go-chang Salt Marsh. Kor. J. Mycol. 40: 86-92.   DOI
5 You, Y. H., H. Yoon, Y. Seo, M. Kim, M. S. Kang, C. Kim, S. C. Ha, G. Y. Cho, and J. G. Kim. 2012. Genetic Diversity of Culturable Endophytic fungi Isolated from Halophytes Naturally Growing in Muan Salt Marsh. Kor. J. Life Sci. 22: 970-980.   DOI
6 Zhang, X. Y., J. Bao, G. H. Wang, F. He, X. Y. Xu, and S. H. Qi. 2012. Diversity and Antimicrobial activity of culturable fungi isolated from six species of the South China sea gorgonians. Microb. Ecol. In press. DOI 10.1007/s00248- 012-0050-x.
7 Ding, B., Y. Yin, F. Zhang, and Z. Li. 2011. Recovery and phylogenetic diversity of culturable fungi associated with marine sponges Clathrina luteoculcitella and Holoxea sp. in the South China Sea. Mar. Biotechnol. 13: 713-21.   DOI   ScienceOn
8 Gomes, N. C. M., D. F. R. Cleary, F. N. Pinto, C. Egas, A. Almeida, A. Cunha, L. C. S. Mendonça-Hagler, and K. Smalla. 2010. Taking root: enduring effect of rhizosphere bacterial colonization in mangroves. PLoS ONE 5: e14065.   DOI
9 Hamayun, M., S. A. Khan, M. A. Khan, A. L. Khan, S. M. Kang, S. K. Kim, G. J. Joo, and I. J. Lee. 2009. Gibberellin production by pure cultures of a new strain of Aspergillus fumigates. World J. Microbiol. Biotechnol. 25: 1785-1792.   DOI   ScienceOn
10 Khan, A. L., M. Hamayun, N. Ahmad, J. Hussain, S. M. Kang, Y. H. Kim, M. Adnan, D. S. Tang, M. Waqas, R. Radhakrishnan, Y. H. Hwang, and I. J. Lee. 2011. Salinity Stress Resistance Offered by Endophytic Fungal Interaction Between Penicillium minioluteum LHL09 and Glycine max. L. J Microbiol. Biotechnol. 21: 893-902.   DOI
11 Khan, A. L., M. Hamayun, S. M. Kang, Y. H. Kim, H. Y. Jung, J. H. Lee, and I. J. Lee, 2012. Endophytic fungal association via gibberellins and indole acetic acid can improve plant growth under abiotic stress: an example of Paecilomyces formosus LHL10. BMC Microbiol. 12: 3.   DOI
12 Kim, B. S., H. M. Oh, H. Kang, S. Park, and J. Chun. 2004. Remarkable bacterial diversity in the tidal flat sediment as revealed by 16S rDNA analysis. J. Microbiol. Biotechnol. 14: 205-211.
13 Khan, S. A., M. Hamayun, S. O. Rim, I. J. Lee, J. C. Seu, Y. S. Choo, I. N. Jin, S. D. Kim, I. K. Lee, and J. G. Kim. 2008. Isolation of endophytic fungi capable of plant growth promotion from monocots inhibited in the coastal sand dunes of Korea. Kor. J. Life Sci. 18: 1355-1359.   DOI
14 Khan, S. A., M. Hamayun, H. Y. Kim, H. J. Yoon, I. J. Lee, and J. G. Kim. 2009. Gibberellin production and plant growth promotion by a newly isolated strain of Gliomastix murorum. World J. Microbiol. Biotechnol. 25: 829-833.   DOI   ScienceOn
15 Pielou, E. C. 1975. Ecological diversity. John Wiley, p 165. New York, USA.
16 Kil, Y. J., J. K. Eo, and A. H. Eom. 2009. Molecular identification and diveristy of endophytic fungi isolated from Pinus densiflora in Boeun, Korea. Kor. J. Mycol. 37: 130-133.   DOI
17 Mohamed, D. J. and J. B. Martiny. 2011. Patterns of fungal diversity and composition along a salinity gradient. ISME J. 5: 379-388.   DOI   ScienceOn
18 Park, K. H. and H. K. Lee. 2006. Establishment of the wetland ecosystem information system based on Web-GIS in Gyeongnam region. J. Environ. Res. 6: 99-103.
19 Arnold, E. A., L. C. Mejia, D. Kyllo, E. Rojas, Z. Maynard, N. Robbins, and E. A. Herre. 2003. Fungal endophytes limit pathogen damage in a tropical tree. Proc. Natl. Acid. Sci. USA. 100: 15649-15654.   DOI   ScienceOn
20 Chapman, V. J. 1974. Salt Marshes and Salt Deserts of the World. In Ecology of Halophytes. pp. 3-22. Academic Press, New York. USA.
21 Seo, S. T., K. H. Kim, M. J. Kim, J. S. Hong, J. H. Park, and S. C. Shin. 2009. Diversity of fungal endophytes from Pinus koraiensis leaves in Korea. Kor. J. Mycol. 37: 108-110.   DOI
22 Redman, R. S., K. B. Sheehan, R. G. Stout, R. J. Rodriguez. and J. M. Henson. 2002. Thermotolerance conferred to plant host and fungal endophyte during mutualistic symbiosis. Science 298: 1581.   DOI   ScienceOn
23 Rodriguez, R. J., R. S. Redman, and J. M. Henson. 2004. The role of fungal symbioses in the adaptation of plants to high stress environments. Mitig. Adap. Strat. Glob. Change 9: 261-272.
24 Rodriguez, R. J., J. Henson, V. E. Van, M. Hoy, L. Wright, F. Beckwith, Y. Kim, and R. S. Redman. 2008. Stress tolerance in plants via habitat-adapted symbiosis. ISME J. 2: 404-416.   DOI   ScienceOn
25 Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. Molecular evolutionary genetics analysis (MEGA) software version4.0. Mol. Biol. Evol. 24: 1596-1599.   DOI   ScienceOn
26 Vazquez M. M., S. Cesar, R. Azcon, and J. M. Barea. 2000. Interaction between arbuscular mycorrhizal fungi and other microbial inoculants (Azospirillum, Pseudomonas, Trichoderma) and their effects on microbial population and enzyme activities in the rhizosphere of maize plants. Appl. Soil Ecol. 15: 261-272.   DOI   ScienceOn