Large-Circular Single-stranded Sense and Antisense DNA for Identification of Cancer-Related Genes |
Bae, Yun-Ui
(Department of Physiology, Yeungnam University School of Medicine)
Moon, Ik-Jae (WelGENE Inc.) Seu, Young-Bae (School of Life Sciences & Biotechnology, Kyungpook National University) Doh, Kyung-Oh (Department of Physiology, Yeungnam University School of Medicine) |
1 | Ahn, J. D., R. Morishita, Y. Kaneda, S. J. Lee, K. Y. Kwon, S. Y. Choi, K. U. Lee, J. Y. Park, I. J. Moon, J. G. Park, M. Yoshizumi, Y. Ouchi, and I. K. Lee. 2002. Inhibitory effects of novel AP-1 decoy oligodeoxynucleotides on vascular smooth muscle cell proliferation in vitro and neointimal formation in vivo. Circ Res. 90: 1325-1332. DOI ScienceOn |
2 | Busto, R., J. C. Prieto, G. Bodega, J. Zapatero, L. Fogue, and I. Carrero. 2003. VIP and PACAP receptors coupled to adenylyl cyclase in human lung cancer: a study in biopsy specimens. Peptides. 24: 429-436. DOI ScienceOn |
3 | Chang, C. C., J. Y. Shih, Y. M. Jeng, J. L. Su, B. Z. Lin, S. T. Chen, Y. P. Chau, P. C. Yang, and M. L. Kuo. 2004. Connective tissue growth factor and its role in lung adenocarcinoma invasion and metastasis. J. Natl. Cancer Inst. 96: 364-375. DOI ScienceOn |
4 | Fukunaga, Y., S. Bandoh, J. Fujita, Y. Yang, Y. Ueda, S. Hojo, K. Dohmoto, Y. Tojo, J. Takahara, and T. Ishida. 2002. Expression of cytokeratin 8 in lung cancer cell lines and measurement of serum cytokeratin 8 in lung cancer patients. Lung Cancer. 38: 31-38. |
5 | Lee, Y. H., I. J. Moon, B. Hur, J. H. Park, K. H. Han, S. Y. Uhm, Y. J. Kim, K. J. Kang, J. W. Park, Y. B. Seu, Y. H. Kim, and J. G. Park. 2005. Gene knockdown by large circular antisense for high-throughput functional genomics. Nat Biotechnol. 23: 591-599. DOI ScienceOn |
6 | Nagayama, M., A. Sato, H. Hayakawa, T. Urano, Y. Takada, and A. Takada. 1994. Plasminogen activators and their inhibitors in non-small cell lung cancer. Low content of type 2 plasminogen activator inhibitor associated with tumor dissemination. Cancer. 73: 1398-1405. DOI ScienceOn |
7 | DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science. 278: 680-686. DOI |
8 | Park, J. G. 2004. DNA chip using single stranded large circular DNA: Low background and stronger signal intensity. J Biomed Lab Sci. 10: 75-84. |
9 | Sathyanarayana, U. G., S. Toyooka, A. Padar, T. Takahashi, E. Brambilla, J. D. Minna, and A. F. Gazdar. 2003. Epigenetic inactivation of laminin-5-encoding genes in lung cancers. Clin Cancer Res. 9: 2665-2672. |
10 | Golub, T. R., D. K. Slonim, P. Tamayo, C. Huard, M. Gaasenbeek, J. P. Mesirov, H. Coller, M. L. Loh, J. R. Downing, M. A. Caligiuri, C. D. Bloomfield, and E. S. Lander. 1999. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science. 286: 531-537. DOI |
11 | Guan, H., Z. Zhou, G. E. Gallick, J. S. F., J. Morales, A. K. Sood, S. J. Corey, and E. S. Kleinerman. 2008. Targeting Lyn inhibits tumor growth and metastasis in Ewing's sarcoma. Mol Cancer Ther. 7: 1807-1816. DOI ScienceOn |
12 | Paddison, P. J., J. M. Silva, D. S. Conklin, M. Schlabach, M. Li, S. Aruleba, V. Balija, A. O'Shaughnessy, L. Gnoj, K. Scobie, K. Chang, T. Westbrook, M. Cleary, R. Sachidanandam, W. R. McCombie, S. J. Elledge, and G. J. Hannon. 2004. A resource for large-scale RNA-interference-based screens in mammals. Nature. 428: 427-431. DOI ScienceOn |
13 | Silva, J. M., M. Z. Li, K. Chang, W. Ge, M. C. Golding, R. J. Rickles, D. Siolas, G. Hu, P. J. Paddison, M. R. Schlabach, N. Sheth, J. Bradshaw, J. Burchard, A. Kulkarni, G. Cavet, R. Sachidanandam, W. R. McCombie, M. A. Cleary, S. J. Elledge, and G. J. Hannon. 2005. Second-generation shRNA libraries covering the mouse and human genomes. Nat Genet. 37: 1281-1288. |
14 | Ledakis, P., W. T. Tester, N. Rosenberg, D. Romero-Fischmann, I. Daskal, and T. T. Lah. 1996. Cathepsins D, B, and L in malignant human lung tissue. Clin Cancer Res. 2: 561-568. |
15 | Schena, M., D. Shalon, R. W. Davis, and P. O. Brown. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science. 270: 467-470. DOI |
16 | Zeng, J. Z., H. Y. Wang, Z. J. Chen, A. Ullrich, and M. C. Wu. 2002. Molecular cloning and characterization of a novel gene which is highly expressed in hepatocellular carcinoma. Oncogene. 21: 4932-4943. DOI ScienceOn |
17 | Jupin, I. and B. Gronenborn. 1995. Abundant, easy and reproducible production of single-stranded DNA from phagemids using helper phage-infected competent cells. Nucleic Acids Res. 23: 535-536. DOI ScienceOn |
18 | Kunze, D., D. Wuttig, S. Fuessel, K. Kraemer, M. Kotzsch, A. Meye, M. O. Grimm, O. W. Hakenberg, and M. P. Wirth. 2008. Multitarget siRNA inhibition of antiapoptotic genes (XIAP, BCL2, BCL-X(L)) in bladder cancer cells. Anticancer Res. 28: 2259-2263. |
19 | Asyali, M. H., M. M. Shoukri, O. Demirkaya, and K. S. Khabar. 2004. Assessment of reliability of microarray data and estimation of signal thresholds using mixture modeling. Nucleic Acids Res. 32: 2323-2335. DOI |
20 | Alizadeh, A. A., M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald, J. C. Boldrick, H. Sabet, T. Tran, X. Yu, J. I. Powell, L. Yang, G. E. Marti, T. Moore, J. Hudson, Jr., L. Lu, D. B. Lewis, R. Tibshirani, G. Sherlock, W. C. Chan, T. C. Greiner, D. D. Weisenburger, J. O. Armitage, R. Warnke, R. Levy, W. Wilson, M. R. Grever, J. C. Byrd, D. Botstein, P. O. Brown, and L. M. Staudt. 2000. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature. 403: 503-511. DOI ScienceOn |
21 | Lockhart, D. J., H. Dong, M. C. Byrne, M. T. Follettie, M. V. Gallo, M. S. Chee, M. Mittmann, C. Wang, M. Kobayashi, H. Horton, and E. L. Brown. 1996. Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol. 14: 1675-1680. DOI ScienceOn |
22 | Nuwaysir, E. F., M. Bittner, J. Trent, J. C. Barrett, and C. A. Afshari. 1999. Microarrays and toxicology: the advent of toxicogenomics. Mol Carcinog. 24: 153-159. DOI ScienceOn |
23 | Lee, J. K., K. J. Bussey, F. G. Gwadry, W. Reinhold, G. Riddick, S. L. Pelletier, S. Nishizuka, G. Szakacs, J. P. Annereau, U. Shankavaram, S. Lababidi, L. H. Smith, M. M. Gottesman, and J. N. Weinstein. 2003. Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells. Genome Biol. 4: R82. DOI |