Browse > Article

Analysis of a Putative DNA Polymerase I gene in Brevibacterium ammoniagenes.  

오영필 (우송대학교 식품생명과학부)
윤기홍 (우송대학교 식품생명과학부)
Publication Information
Microbiology and Biotechnology Letters / v.30, no.2, 2002 , pp. 105-110 More about this Journal
Abstract
The sequence of 3,221 nucleotides immediately adjacent to rpsA gene encoding 30S ribosomal protein S1 of Brevibacterium ammoniagenes was determined. A putative open reading frame (ORF) of 2,670 nucleotides for a polypeptide of 889 amino acid residues and a TAG stop codon was found, which is located at a distance of 723 nucleotides upstream from rpsA gene with same translational direction. The deduced amino acid sequence of the ORF was found to be highly homologous to the DNA polymerase I of Streptomyces griseus (75.48％), Rhodococcus sp. ATCC 15963 (56.69％), Mycobacterium tuberculosis (55.46％) and Mycobacterium leprae (53.99％). It was suggested that the predicted product of the ORF is a DNA polymerase I with three functional domains. Two domains of 5 → 3 exonuclease and DNA polymerase are highly conserved with other DNA polymerase I, but 3 → 5 exonuclease domain is less conserved.
Keywords
Brevibacterium ammoniagenes; DNA polymerase I; gene; nucleotide sequence;
Citations & Related Records
Times Cited By KSCI : 3  (Citation Analysis)
연도 인용수 순위
1 A rapid alkaline extraction procedure for screening recombinant plasmid DNA /
[ Birnboim, H. C.;J. Doly ] / Nucleic Acids Res.
2 Studies on transformation of Escherichia coli with plasmids /
[ Hanahan, D. ] / J. Mol. Biol.   DOI
3 Gene duplications in evolution of archaeal family B DNA polymerases /
[ David, R. E.;H. -P. Klenk;W. F. Doolittle ] / J. Bacteriol.   DOI
4 Cloning, Nucleotide Sequencing, and Characterization of ptsG Gene Encoding Glucose-specific Enzyme II of Phosphotransferase system from Brevibacterium lactofermentum /
[ Yoon, K. -H.;K. -N. Lee;J. -K. Lee;S. C. Park ] / J. Microbiol. Biotechnol.   과학기술학회마을
5 The Mycobacterium leprae genome: systematic sequence analysis identifies key catabolic enzymes, ATP-dependent transport systems and a novel polA locus associated with genomic variability /
[ Fsihi, H.;S. T. Cole ] / Mol. Microbiol.   DOI   ScienceOn
6 /
[ Kornberg, A.;T. A. Baker ] / DNA replication, 2ng ed.
7 Nucleotide sequence of the putative gene encoding 30S ribosomal protein S1 from Brevibacterium ammoniagenes /
[ Yoon, K. -H.;M. -S. Lee;Y. P. Oh;J. H. Choi ] / Kor. J. Appl. Microbiol. Biotechnol.   과학기술학회마을
8 Primary structure of the DNA polymerase I gene of an alpha-Proteobacterium, Rhizobium leguminosarum, and comparison with other family a DNA polymerases /
[ Huang, Y.-P.;J. A. Downie;J. Ito. ] / Curr. Microbiol.   DOI   ScienceOn
9 A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome /
[ Redenbach, M.;H. M. Kieser;D. Denapaite;A. Eichner;J. Cullum;H. Kinashi;D. A. Hopwood ] / Mol. Microbiol.   DOI   ScienceOn
10 DNA polymerase active site is highly mutable: Evolutionary consequences /
[ Patel, P. H.;L. A. Loeb ] / Proc. Natl. Acad. Sci. USA   DOI   ScienceOn
11 Isolation, characterization, and expression in Escherichia coli of the DNA polymerase gene from Thermus aquaticus /
[ Lawyer, F. C.;S. Stoffel;R. K. Saiki;K. Myambo;R. Drummond;D. H. Gelfand ] / J. Biol. Chem.
12 /
[ Sambrook, J.;E. F. Fritsch;T. Maniatis ] / Molecular cloning, A laboratory mannual, 2nd ed.
13 DNA sequencing with chain terminating inhibitors /
[ Sanger, F.;S. Nicklen;A. R. Coulson ] / Proc. Natl. Acad. Sci. USA   DOI   ScienceOn
14 Cloning and expression of the gene encoding mannose enzyme II of the Corynebacterium glutamicum phosphoenolpyruvate-dependent phosphotransferase system in Escherichia coli /
[ Lee, J. -.;M. -H. Sung;K. -H. Yoon;J. -G. Pan;J. -H. Yu;T. -K. Oh ] / J. Microbiol. Biotechnol   과학기술학회마을
15 A novel DNA polymerase family found in Archaea /
[ Yoshizumi, I.;K. Komori;I. K. O. Cann;Y. Koga ] / J. Bacteriol
16 Transfer of Brevibacterium divaricatum DSM 20297T, "Brevibacterium flavum" DSM 20411, "Brevibacterium lactofermentum" DSM 20412 and DSM 1412, and Corynebacterium lilium DSM 20137T to Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns /
[ Liebl, W.;M. Ehrmann;W. Ludwig;K. H. Schleifer ] / Int. J. Syst. Bacteriol   DOI   ScienceOn
17 Basic local alignment search tool /
[ Altschul, S. F.;W. Gish;W. Miller;E. W. Myers;D. J. Lipman ] / J. Mol. Biol.
18 Cloning, expression, and nucleotide sequencing of the gene encoding glucose permease of phosphotransferase system from Brevibacterium ammoniagenes /
[ Yoon, K. -H.;H. Yim;K. H. Jung ] / J. Microbiol. Biotechnol.   과학기술학회마을
19 Nucleotide sequence of the gene encoding the Corynebacterium glutamicum mannose enzyme II and analyses of the deduced protein sequence /
[ Lee, J. -K.;M. -H. Sung;K. -H. Yoon;J. -H. Yu;T. -K. Oh ] / FEMS Microbiol. Lett.   DOI
20 Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence /
[ Cole, S. T. ] / Nature   DOI   ScienceOn