Complete genome sequence of Marinobacter salarius HL2708#2 isolated from a lava sea water environment on Jeju Island
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Oh, Hyun-Myung
(Institute of Liberal Arts Education, Pukyong National University)
Kim, Dae-Hyun (Cotde Inc.) Han, Seong-Jeong (Cotde Inc.) Song, Jong-Ho (Cotde Inc.) Kim, Kukhyun (Cotde Inc.) Jang, Dongil (Cotde Inc.) |
1 | Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, et al. 2014. Pfam: the protein families database. Nucleic Acids Res. 42, D222-D230. DOI |
2 | Gauthier MJ, Lafay B, Christen R, Fernandez L, Acquaviva M, Bonin P, and Bertrand JC. 1992. Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbondegrading marine bacterium. Int. J. Syst. Evol. Microbiol. 42, 568-576. |
3 | Griffiths-Jones S, Moxon S, Marshall M, Khanna A, Eddy SR, and Bateman A. 2005. Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33, D121-D124. DOI |
4 | Hyatt D, Chen GL, LoCascio PF, Land ML, Larimer FW, and Hauser LJ. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11, 119. DOI |
5 | Koo CS, Sookyung S, Kim D, and Jang D. 2018. A novel marine-derived bacterium, and cosmetic compositions using the same. Vol. KR101918673B1, Republic of Korea. |
6 | Krogh A, Larsson B, von Heijne G, and Sonnhammer ELL. 2001. Predicting transmembrane protein topology with a hidden markov model: application to complete genomes. J. Mol. Biol. 305, 567-580. DOI |
7 | Krzywinski MI, Schein JE, Birol I, Connors J, Gascoyne R, Horsman D, Jones SJ, and Marra MA. 2009. Circos: An information aesthetic for comparative genomics. Genome Res. 19, 1639-1645. DOI |
8 | Medema MH, Blin K, Cimermancic P, de Jager V, Zakrzewski P, Fischbach MA, Weber T, Takano E, and Breitling R. 2011. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences. Nucleic Acids Res. 39, W339-W346. DOI |
9 | Ng HJ, Lopez-Perez M, Webb HK, Gomez D, Sawabe T, Ryan J, Vyssotski M, Bizet C, Malherbe F, Mikhailov VV, et al. 2014. Marinobacter salarius sp. nov. and Marinobacter similis sp. nov., isolated from sea water. PLoS One 9, e106514. DOI |
10 | Petersen TN, Brunak S, von Heijne G, and Nielsen H. 2011. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8, 785. DOI |
11 | Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, et al. 2003. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4, 41. DOI |
12 | Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563. DOI |
13 | Wu CH, Apweiler R, Bairoch A, Natale DA, Barker WC, Boeckmann B, Ferro S, Gasteiger E, Huang H, Lopez R, et al. 2006. The universal protein resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34, D187-D191. DOI |
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