Browse > Article
http://dx.doi.org/10.7845/kjm.2018.8074

Complete genome sequence of Tamlana sp. UJ94 degrading alginate  

Jung, Jaejoon (National Marine Biodiversity Institute of Korea)
Bae, Seung Seob (National Marine Biodiversity Institute of Korea)
Chung, Dawoon (National Marine Biodiversity Institute of Korea)
Baek, Kyunghwa (National Marine Biodiversity Institute of Korea)
Publication Information
Korean Journal of Microbiology / v.54, no.4, 2018 , pp. 463-464 More about this Journal
Abstract
Tamlana sp. UJ94 isolated from seawater can degrade alginate. To identify the genomic basis of this activity, the genome was sequenced. The genome was composed of 4,116,543 bp, 3,609 coding sequences, and 35.2 mol% G + C content. A BLASTp search predicted the presence of 9 alginate lyases as well as 6 agarases, 5 amylases, 4 carrageenases, 1 cellulase, 4 pectate lyases, and 7 xylanases, indicating its ability to degrade diverse polysaccharides. The genome of strain UJ94 is a source of polysaccharide-degrading enzymes for bioconversion processes.
Keywords
Tamlana sp.; alginate lyase; bioconversion; carbohydrate-active enzyme; polysaccharide;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Grondin JM, Tamura K, Dejean G, Abbott DW, and Brumer H. 2017. Polysaccharide utilization loci: Fueling microbial communities. J. Bacteriol. 199, e00860-16.
2 Terrapon N, Lombard V, Drula E, Lapebie P, Al-Masaudi S, Gilbert HJ, and Henrissat B. 2018. PULDB: the expanded database of Polysaccharide utilization loci. Nucleic Acids Res. 46, D677-D683.   DOI
3 Trincone A. 2011. Marine biocatalysts: enzymatic features and applications. Mar. Drugs 9, 478-499.   DOI
4 Lombard V, Golaconda Ramulu H, Drula E, Coutinho PM, and Henrissat B. 2014. The carbohydrate-active enzymes database (CAZy) in 2013. Nucleic Acids Res. 42, D490-D495.   DOI