[KSCI] Korea Science Citation Index Service

http://dx.doi.org/10.7845/kjm.2018.8034

Complete genome sequence of the polycyclic aromatic hydrocarbons biodegrading bacterium Idiomarina piscisalsi strain 10PY1A isolated from oil-contaminated soil

Nzila, Alexis (Department of Life Sciences, King Fahd University of Petroleum and Minerals)
Jung, Byung Kwon (School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University)
Kim, Min-Chul (School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University)
Ibal, Jerald Conrad (School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University)
Budiyanto, Fitri (Department of Life Sciences, King Fahd University of Petroleum and Minerals)
Musa, Musa M. (Department of Chemistry, King Fahd University of Petroleum and Minerals)
Thukair, Assad (Department of Life Sciences, King Fahd University of Petroleum and Minerals)
Kim, Sang-Jun (Department of Natural Sciences, Republic of Korea Naval Academy)
Shin, Jae-Ho (School of Applied Biosciences, College of Agriculture and Life Sciences, Kyungpook National University)

Publication Information

Korean Journal of Microbiology / v.54, no.3, 2018 , pp. 289-292 More about this Journal

Abstract

Using pyrene as the enrichment nutrient, a bacterial strain 10PY1A, was isolated by enrichment culture from oil-contaminated sea sand of Arabian Gulf in Saudi Arabia, and this strain belongs to the species Idiomarina piscisalsi, based on 16S RNA gene sequence analysis. The genome of I. piscisalsi strain 10PY1A contains 2,346 protein-coding sequences and an average GC content of 47.4% in its chromosome (2.59 Mbp). Genes encoding proteins related to the degradation of pyrene were existed in the strain 10PY1A genome, indicating that this strain can be used to degrade polycyclic aromatic hydrocarbons in oil-contaminated marine flora and soil.

Keywords

Idiomarina piscisalsi strain 10PY1A; complete genome sequence; polycyclic aromatic hydrocarbon; pyrene;

Citations & Related Records

Reference

1	Sierra-Garcia IN, Alvarez JC, de Vasconcellos SP, de Souza AP, dos Santos Neto EV, and de Oliveira VM. 2014. New hydrocarbon degradation pathways in the microbial metagenome from Brazilian petroleum reservoirs. PLoS One 9, e90087. DOI
2	Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9, 75. DOI
3	Bostrom CE, Gerde P, Hanberg A, Jernstrom B, Johansson C, Kyrklund T, Rannug A, Tornqvist M, Victorin K, and Westerholm R. 2002. Cancer risk assessment, indicators, and guidelines for polycyclic aromatic hydrocarbons in the ambient air. Environ. Health Perspect. 110, 451-488.
4	Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569. DOI
5	Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G, Peluso P, Rank D, Baybayan P, Bettman B, et al. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323, 133-138. DOI
6	Fakhru'l-Razi A, Pendashteh A, Abdullah LC, Biak DRA, Madaeni SS, and Abidin ZZ. 2009. Review of technologies for oil and gas produced water treatment. J. Hazard Mater. 170, 530-551. DOI
7	Oppermann UCT and Maser E. 2000. Molecular and structural aspects of xenobiotic carbonyl metabolizing enzymes. Role of reductases and dehydrogenases in xenobiotic phase I reaction. Toxicology 144, 71-81. DOI