Browse > Article
http://dx.doi.org/10.7845/kjm.2018.8030

Draft genome sequence of Pseudoalteromonas sp. meg-B1 isolated from marine sediment  

Park, Soo-Je (Department of Biology, Jeju National University)
Park, Sewook (Food Microbiology Division, Ministry of Food and Drug Safety)
Publication Information
Korean Journal of Microbiology / v.54, no.3, 2018 , pp. 280-282 More about this Journal
Abstract
Pseudoalteromonas sp. meg-B1 belonging to Gammaproteobacteria was isolated from marine sediment in Jeju island. Here, we report the draft genome sequence of strain meg-B1 with a size of approximately 4.15 Mbp and a mean G + C content of 41.2%. The draft genome included 3,606 coding sequences, and 9 ribosomal RNA and 94 transfer RNA genes. In the draft genome, genes (e.g. choline dehydrogenase) involved in the accumulation of compatible solutes required for survival in marine environments have been identified.
Keywords
Pseudoalteromonas; genome; marine sediment;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Bankevich A, Nurk S, Antipov D, Gurevich AA, Dvorkin M, Kulikov AS, Lesin VM, Nikolenko SI, Pham S, Prjibelski AD, et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477.   DOI
2 Gauthier G, Gauthier M, and Christen R. 1995. Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations. Int. J. Syst. Bacteriol. 45, 755-761.   DOI
3 Grissa I, Vergnaud G, and Pourcel C. 2007. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35, W52-57.   DOI
4 Ivanova EP, Ng HJ, and Webb HK. 2014. The family Pseudoalteromonadaceae, pp. 575-582. In Rosenberg E, DeLong EF, Lory S, Stackebrandt E, and Thompson F. (eds.), The prokaryotes: Gammaproteobacteria. Springer, Berlin, Heidelberg, Germany.
5 Zhou Y, Liang Y, Lynch KH, Dennis JJ, and Wishart DS. 2011. PHAST: a fast phage search tool. Nucleic Acids Res. 39, W347-352.   DOI
6 Parks DH, Imelfort M, Skennerton CT, Hugenholtz P, and Tyson GW. 2015. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 25, 1043-1055.   DOI
7 Angiuoli SV, Gussman A, Klimke W, Cochrane G, Field D, Garrity G, Kodira CD, Kyrpides N, Madupu R, Markowitz V, et al. 2008. Toward an online repository of standard operating procedures (SOPs) for (meta)genomic annotation. OMICS 12, 137-141.   DOI