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http://dx.doi.org/10.7845/kjm.2018.7087

Draft genome sequence of a bacterial plant pathogen Erwinia pyrifoliae strain EpK1/15 isolated from an apple twig showing black shoot blight  

Lee, Gyu Min (Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University)
Oh, Eom-Ji (Department of Horticultural Biotechnology, College of Life Sciences, Kyung Hee University)
Ko, Seyoung (Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University)
Park, Jungkum (Department of Horticultural Biotechnology, College of Life Sciences, Kyung Hee University)
Park, Duck Hwan (Applied Biology Program, Division of Bioresource Sciences, Kangwon National University)
Kim, Donghyuk (Graduate School of Biotechnology, College of Life Sciences, Kyung Hee University)
Oh, Chang-Sik (Department of Horticultural Biotechnology, College of Life Sciences, Kyung Hee University)
Publication Information
Korean Journal of Microbiology / v.54, no.1, 2018 , pp. 69-70 More about this Journal
Abstract
Erwinia pyrifoliae is a Gram-negative bacterium causing black shoot blight in apple and Asian pear trees. E. pyrifoliae strain EpK1/15 was isolated in 2014 from an apple twig from the Pocheon, Gyeonggi-do, South Korea. In this study, we report the draft genome sequence of E. pyrifoliae EpK1/15 using PacBio RS II platform. The draft genome is comprised of a circular chromosome with 4,027,225 bp and 53.4% G + C content and a plasmid with 48,456 bp and 50.3% G + C content. The draft genome includes 3,798 protein-coding genes, 22 rRNA genes, 77 tRNA genes, 13 non-coding RNA genes, and 231 pseudo genes.
Keywords
Erwinia pyrifoliae; apple; black shoot blight; draft genome sequence; PacBio RS II;
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