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http://dx.doi.org/10.7845/kjm.2017.7074

Complete genome sequence of Bacillus velezensis YC7010, an endophytic bacterium with plant growth promoting, antimicrobial and systemic resistance inducing activities in rice  

Harun-Or-Rashid, Md. (Division of Applied Life Science (BK21 Plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University)
Hwang, Jeong Hyeon (Division of Applied Life Science (BK21 Plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University)
Chung, Young Ryun (Division of Applied Life Science (BK21 Plus), Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University)
Publication Information
Korean Journal of Microbiology / v.53, no.4, 2017 , pp. 329-331 More about this Journal
Abstract
Bacillus velezensis YC7010 is an endophytic bacterium isolated from the rice rhizosphere in Jinju, Republic of Korea, with properties conductive to growth promotion, antibiosis and induced systemic resistance to significant, soil-borne rice fungal and bacterial pathogens. The genome of B. velezensis YC7010 comprises a 3,975,683 bp circular chromosome which consists of 3,790 protein-coding genes (86tRNA and 27rRNA genes). Based on genomic analysis, we identified genes involved in colonization and establishment inside the plant, biosynthesis of antibiotic compounds such as surfactin, plipapastatin, bacillibactin, and bacillaene, as well as the production of the phytohormones and volatile compounds which serve to promote the plants growth and development.
Keywords
Bacillus velezensis YC7010; antibiotic compounds; endophytic bacterium; phytohormones; volatile compounds;
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1 Seemann, T. 2014. Prokka: Rapid prokaryotic genome annotation. Bioinformatics 30, 2068-2069.   DOI
2 Shahzad, R., Khan, A.L., Bilal, S., Asaf, S., and Lee, I.J. 2017. Plant growth-promoting endophytic bacteria versus pathogenic infections: An example of Bacillus amyloliquefaciens RWL-1 and Fusarium oxysporum f. sp. lycopersici in tomato. PeerJ. 5, e3107.   DOI
3 Sommer, D.D., Delcher, A.L., Salzberg, S.L., and Pop, M. 2007. Minimus: a fast, lightweight genome assembler. BMC Bioinformatics 8, 64-75.   DOI
4 Chin, C.S., Alexander, D.H., Marks, P., Klammer, A.A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E.E., et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569.   DOI
5 Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., Llamas, I., and Quesada, E. 2005. Bacillus velezensis sp. nov., a surfactantproducing bacterium isolated from the river Vélez in Málaga, southern Spain. Int. J. Syst. Evol. Microbiol. 55, 191-195.   DOI
6 Chung, E.J., Hossain, M.T., Khan, A., Kim, K.H., Jeon, C.O., and Chung, Y.R. 2015. Bacillus oryzicola sp. nov., an endophytic bacterium isolated from the roots of rice with antimicrobial, plant growth promoting, and systemic resistance inducing activities in rice. Plant Pathol. J. 31, 152-164.   DOI
7 Dunlap, C.A., Kim, S., Kwon, S., and Rooney, A.P. 2016. Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens ; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and "Bacillus oryzicola" are later heterotypic synonyms of Bacillus velezensis, based on phylogenomics. Int. J. Syst. Evol. Microbiol. 66, 1212-1217.   DOI
8 Eid, J., Fehr, A., Gray, J., Luong, K., Lyle, J., Otto, G., Peluso, P., Rank, D., Baybayan, P., Bettman, B., et al. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323, 133-138.   DOI
9 Hallmann, J. and Berg, G. 2006. Spectrum and population dynamics of bacterial root endophytes, pp. 15-31. In microbial root endophytes. Springer, Berlin, Heidelberg.
10 Hossain, M.T., Khan, A., Chung, E.J., Rashid, M.H., and Chung, Y.R. 2016. Biological control of rice bakanae by an endophytic Bacillus oryzicola YC7007. Plant Pathol. J. 32, 228-241.   DOI