Browse > Article
http://dx.doi.org/10.7845/kjm.2017.7042

Complete genome sequence of Spirosoma aerolatum KACC 17939T, a bacterium related to the DNA repair  

Kim, Dong-Uk (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Ju-Young (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Su Jeong (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Min Ji (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Lee, Ju Yeon (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Myung Kyum (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Publication Information
Korean Journal of Microbiology / v.53, no.3, 2017 , pp. 230-232 More about this Journal
Abstract
A Gram-stain-negative, yellow-pigmented bacterial strain, designated Spirosoma aerolatum KACC $17939^T$, was isolated from a biofilm of car air conditioner collected in Republic of Korea. In this study, we report the complete genome sequence of a bacterium Spirosoma aerolatum KACC $17939^T$ obtained using the PacBio RS II platform. The genome comprised of 7,959,595 bp with the G + C content of 48.3%, the genome included 6,640 genes were predicted, among them, 6,471 genes are protein-coding genes.
Keywords
Spirosoma; air conditioner; biofilm; PacBio RS II;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Ahn, J.H., Weon, H.Y., Kim, S.J., Hong, S.B., Seok, S.J., and Kwon, S.W. 2014. Spirosoma oryzae sp. nov., isolated from rice soil and emended description of the genus Spirosoma. Int. J. Syst. Evol. Microbiol. 64, 3230-3234.   DOI
2 Finster, K.W., Herbert, R.A., and Lomstein, B.A. 2009. Spirosoma spitsbergense sp. nov. and Spirosoma luteum sp. nov., isolated from a high Arctic permafrost soil, and emended description of the genus Spirosoma. Int. J. Syst. Evol. Microbiol. 59, 839-844.   DOI
3 Grant, J.R. and Stothard, P. 2008. The CGView Server: A comparative genomics tool for circular genomes. Nucleic. Acids. Res. 36, W181-W184.   DOI
4 Garrity, G.M. and Holt, J.G. 2001. The road map to the manual. pp. 119-166. In Boone, D.R., Castenholz, R.W., and Garrity, G.M. (eds.), Bergey's Manual of Systematic Bacteriology, 2nd ed. Springer, New York, USA.
5 Kim, D.U., Lee, H., Kim, S.G., Ahn, J.H., Park, S.Y., and Ka, J.O. 2015. Spirosoma aerolatum sp. nov., isolated from a motor car air conditioning system. Int. J. Syst. Evol. Microbiol. 65, 4003-4007.   DOI
6 Larkin, J.M. and Borrall, R. 1984. Family I. Spirosomaceae Larkin and Borrall 1978, 595AL. pp. 125-126. In Krieg, N.R. and Holt, J.G. (eds.), Bergey's Manual of Systematic Bacteriology, Williams & Wilkins, Baltimore, USA.
7 Tatusova T., DiCuccio, M., Badretdin, A., Chetvernin, V., Ciufo, S., and Li, W. 2013. Prokaryotic Genome Annotation Pipeline The NCBI Handbook [Internet] 2nd ed. pp. 1-23. National Center for Biotechnology Information, Bethesda, MD, USA.