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http://dx.doi.org/10.7845/kjm.2017.7041

Complete genome sequence of Spirosoma rigui KCTC 12531T, a bacterium isolated from fresh water from the Woopo wetland for taxonomic study  

Kim, Dong-Uk (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Ju-Young (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Su Jeong (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Min Ji (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Lee, Ju Yeon (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Kim, Myung Kyum (Department of Bio and Environmental Technology, College of Natural Science, Seoul Women's University)
Publication Information
Korean Journal of Microbiology / v.53, no.3, 2017 , pp. 227-229 More about this Journal
Abstract
Spirosoma rigui KCTC $12531^T$ was isolated from fresh water from the Woopo wetland, Korea. In this study, we report the complete genome sequence of a bacterium Spirosoma rigui KCTC $12531^T$, its complete genome sequence was obtained using the PacBio RS II platform. The genome comprised of 5,828,404 bp with the G + C content of 54.4%, the genome included 4,774 genes were predicted, among them, 4,647 genes are protein-coding genes.
Keywords
Spirosoma; fresh water; PacBio RS II; wetland; Woopo;
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1 Baik, K.S., Kim, M.S., Park, S.C., Lee, D.W., Lee, S.D., Ka, J.O., Choi, S.K., and Seong, C.N. 2007. Spirosoma rigui sp. nov., isolated from fresh water. Int. J. Syst. Evol. Microbiol. 57, 2870-2873.   DOI
2 Baik, K.S., Park, S.C., Kim, E.M., Bae, K.S., Ahn, J.H., Ka, J.O., Chun, J., and Seong, C.N. 2008. Diversity of bacterial community in freshwater of Woopo wetland. J. Microbiol. 46, 647-655.   DOI
3 Grant, J.R. and Stothard, P. 2008. The CGView Server: A comparative genomics tool for circular genomes. Nucleic. Acids. Res. 36, W181-W184.   DOI
4 Garrity, G.M. and Holt, J.G. 2001. The road map to the manual. pp. 119-166. In Boone, D.R., Castenholz, R.W., and Garrity, G.M. (eds.), Bergey's Manual of Systematic Bacteriology, 2nd ed. Springer, New York, USA.
5 Tatusova T., DiCuccio, M., Badretdin, A., Chetvernin, V., Ciufo, S., and Li, W. 2013. Prokaryotic Genome Annotation Pipeline The NCBI Handbook [Internet] 2nd ed. pp. 1-23. National Center for Biotechnology Information, Bethesda, MD, USA.
6 Kim, M.K., Kang, M.S., Srinivasan, S., Lee, D.H., Lee, S.Y., and Jung, H.Y. 2017. Complete genome sequence of Hymenobacter sedentarius DG5B T , a bacterium resistant to gamma radiation. Mol. Cell. Toxicol. 13, 199-205.   DOI
7 Larkin, J.M. and Borrall, R. 1984. Family I. Spirosomaceae Larkin and Borrall 1978, 595AL. pp. 125-126. In Krieg, N.R. and Holt, J.G. (eds.), Bergey's Manual of Systematic Bacteriology, Williams & Wilkins, Baltimore, USA.