Draft genome sequence of Prevotella intermedia KCOM 1107 isolated from a human subgingival dental plaque of gingivitis lesion
![]() |
Park, Soon-Nang
(Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University)
Lim, Yun Kyong (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University) Shin, Ja Young (Macrogen Inc.) Roh, Hanseong (Macrogen Inc.) Kook, Joong-Ki (Korean Collection for Oral Microbiology and Department of Oral Biochemistry, School of Dentistry, Chosun University) |
1 | Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., et al. 2012. SPAdes: A new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477. DOI |
2 | Bao, E., Jiang, T., and Girke, T. 2014. AlignGraph: Algorithm for secondary de novo genome assembly guided by closely related references. Bioinformatics 30, i319-i328. DOI |
3 | Cho, E., Park, S.N., Lim, Y.K., Shin, Y., Paek, J., Hwang, C.H., Chang, Y.H., and Kook, J.K. 2015. Fusobacterium hwasookii sp. nov., isolated from a human periodontitis lesion. Curr. Microbiol. 70, 169-175. DOI |
4 | Haffajee, A.D. and Socransky, S.S. 1994. Microbial etiological agents of destructive periodontal diseases. Periodontology 2000 5, 78-111. DOI |
5 | Luo, R., Liu, B., Xie, Y., Li, Z., Huang, W., Yuan, J., He, G., Chen, Y., Pan, Q., Liu, Y., et al. 2012. SOAPdenovo2: An empirically improved memory-efficient short-read de novo assembler. Gigascience 1, 18. Erratum in: Gigascience 2015. 4, 30. DOI |
6 | Milsom, S.E., Sprague, S.V., Dymock, D., Weightman, A.J., and Wade, W.G. 1996. Rapid differentiation of Prevotella intermedia and P. nigrescens by 16S rDNA PCR-RFLP. J. Med. Microbiol. 44, 41-43. DOI |
7 | Moen, K., Brun, J.G., Valen, M., Skartveit, L., Eribe, E.K., Olsen, I., and Jonsson, R. 2006. Synovial inflammation in active rheumatoid arthritis and psoriatic arthritis facilitates trapping of a variety of oral bacterial DNAs. Clin. Exp. Rheumatol. 24, 656-663. |
8 | Okamoto, M., Maeda, N., Kondo, K., and Leung, K.P. 1999. Hemolytic and hemagglutinating activities of Prevotella intermedia and Prevotella nigrescens. FEMS Microbiol. Lett. 178, 299-304. DOI |
9 | Otto, T.D., Sanders, M., Berriman, M., and Newbold, C. 2010. Iterative correction of reference nucleotides (iCORN) using second generation sequencing technology. Bioinformatics 26, 1704-1707. DOI |
10 | Papapanou, P.N., Neiderud, A.M., Papadimitriou, A., Sandros, J., and Dahlen, G. 2000. "Checkerboard" assessments of periodontal microbiota and serum antibody responses: a case-control study. J. Periodontal. 71, 885-897. DOI |
11 | Park, S.N., Lim, Y.K., and Kook, J.K. 2013. Development of quantitative real-time PCR primers for detecting 42 oral bacterial species. Arch. Microbiol. 195, 473-482. DOI |
12 | Shah, H.N. and Collins, D.M. 1990. Prevotella, a new genus to include Bacteroides elaninogenicus and related species formerly classified in the genus Bacteroides. Int. J. Syst. Bacteriol. 40, 205-208. DOI |
![]() |