Browse > Article
http://dx.doi.org/10.7845/kjm.2017.7029

Draft genome sequence of Lactobacillus reuteri KLR3004 from a fattening pig  

Park, Jongbin (Department of Animal Life Science, Kangwon National University)
Lee, Jun-Yeong (Department of Agricultural Biotechnology, Seoul National University)
Jin, Gwi-Deuk (Department of Animal Life Science, Kangwon National University)
Kim, Eun Bae (Department of Animal Life Science, Kangwon National University)
Publication Information
Korean Journal of Microbiology / v.53, no.2, 2017 , pp. 146-148 More about this Journal
Abstract
We sequenced the genome of Lactobacillus reuteri KLR3004 strain isolated from a fattening pig in South Korea. The sequences were assembled into a draft genome containing 1,996,237 bp with a G+C content of 38.75% and 1,837 predicted protein-coding sequences in 149 contigs.
Keywords
Lactobacillus reuteri; antibacterial activity; genome sequencing; probiotic;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 Mackenzie, D.A., McLay, K., Roos, S., Walter, J., Swarbreck, D., Drou, N., Crossman, L.C., and Juge, N. 2014. Draft genome sequence of a novel Lactobacillus salivarius strain isolated from piglet. Genome Announc. 2, e01231-01213.
2 Martin, M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet. J. 17.
3 McArthur, A.G., Waglechner, N., Nizam, F., Yan, A., Azad, M.A., Baylay, A.J., Bhullar, K., Canova, M.J., De Pascale, G., Ejim, L., et al. 2013. The comprehensive antibiotic resistance database. Antimicrob. Agents Chemother. 57, 3348-3357.   DOI
4 Overbeek, R., Olson, R., Pusch, G.D., Olsen, G.J., Davis, J.J., Disz, T., Edwards, R.A., Gerdes, S., Parrello, B., Shukla, M., et al. 2014. The SEED and the rapid annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 42, D206-214.   DOI
5 Sung, H.G. 2013. Effects of fermented phytogenics on fecal odour and performance in laying hens. Ann. Anim. Resour. Sci. 24, 29-37.   DOI
6 Yeo, S., Lee, S., Park, H., Shin, H., Holzapfel, W., and Huh, C.S. 2016. Development of putative probiotics as feed additives: validation in a porcine-specific gastrointestinal tract model. Appl. Environ. Microbiol. 100, 10043-10054.
7 Ahn, J.S., Park, B.K., Kim, Y.J., Hong, B.C., Ra, C.S., Kim, M.J., and Shin, J.S. 2016. Effects of fermentation using microorganisms on feed value of Astragalus membranaceus by-products. Ann. Anim. Resour. Sci. 27, 44-56.   DOI
8 Bankevich, A., Nurk, S., Antipov, D., Gurevich, A.A., Dvorkin, M., Kulikov, A.S., Lesin, V.M., Nikolenko, S.I., Pham, S., Prjibelski, A.D., et al. 2012. SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J. Comput. Biol. 19, 455-477.   DOI
9 Chiang, M.L., Chen, H.C., Chen, K.N., Lin, Y.C., Lin, Y.T., and Chen, M.J. 2015. Optimizing production of two potential probiotic lactobacilli strains isolated from piglet feces as feed additives for weaned piglets. Asian-Australas J. Anim. Sci. 28, 1163-1170.   DOI
10 Economou, V. and Gousia, P. 2015. Agriculture and food animals as a source of antimicrobial-resistant bacteria. Infect. Drug Resist. 8, 49-61.
11 Grissa, I., Vergnaud, G., and Pourcel, C. 2007. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35, W52-57.   DOI