Browse > Article
http://dx.doi.org/10.7845/kjm.2017.7003

Complete genome of a denitrifying Halioglobus sp. RR3-57 isolated from a seawater recirculating aquaculture system  

Kim, Young-Sam (Department of Microbiology, Pukyong National University)
Noh, Eun Soo (Biotechnology Research Division, National Institute of Fisheries Science)
Lee, Da-Eun (Department of Microbiology, Pukyong National University)
Kim, Kyoung-Ho (Department of Microbiology, Pukyong National University)
Publication Information
Korean Journal of Microbiology / v.53, no.1, 2017 , pp. 58-60 More about this Journal
Abstract
Halioglobus sp. RR3-57 was isolated from a biofilter of a seawater recirculating aquaculture system and its complete genome sequence was obtained using the PacBio RS II platform. Two circular contigs were assembled and considered as a chromosome and a plasmid (size of 4,847,776 bp and 155,799 bp, and G+C content of 57.5% and 53.2%, respectively). Genomic analysis showed RR3-57 had 18 denitrification-related genes and an incomplete prophage.
Keywords
Halioglobus; complete genome; denitrification; seawater recirculating aquaculture system;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Aziz, R.K., Bartels, D., Best, A.A., DeJongh, M., Disz, T., Edwards, R.A., Formsma, K., Gerdes, S., Glass, E.M., Kubal, M., et al. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9, 75.   DOI
2 Chin, C.S., Alexander, D.H., Marks, P., Klammer, A.A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E.E., et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569.   DOI
3 Lee, D.E., Lee, J., Kim, Y.M., Myeong, J.I., and Kim, K.H. 2016. Uncultured bacterial diversity in a seawater recirculating aquaculture system revealed by 16S rRNA gene amplicon sequencing. J. Microbiol. 54, 296-304.   DOI
4 Leonard, N., Blancheton, J., and Guiraud, J. 2000. Populations of heterotrophic bacteria in an experimental recirculating aquaculture system. Aquacul. Engineer. 22, 109-120.   DOI
5 Ward, B.B. 1996. Nitrification and denitrification: probing the nitrogen cycle in aquatic environments. Microb. Ecol. 32, 247-261.
6 Wu, Z., Huang, S., Yang, Y., Xu, F., Zhang, Y., and Jiang, R. 2013. Isolation of an aerobic denitrifying bacterial strain from a biofilter for removal of nitrogen oxide. Aerosol Air Qual. Res. 13, 1126-1132.
7 Zhou, Y., Liang, Y., Lynch, K.H., Dennis, J.J., and Wishart, D.S. 2011. PHAST: a fast phage search tool. Nucleic Acids Res. 39, W347-352.   DOI