Complete genome sequence of a cold-adapted humic acid degrading bacterium Pedobacter sp. PAMC 27299 from the Antarctic seashore
![]() |
Kim, Hye-Jin
(Department of Systems Biotechnology, Chung-Ang University)
Park, Jae Wan (Department of Systems Biotechnology, Chung-Ang University) Park, Ha Ju (Division of Life Sciences, Korea Polar Research Institute) Kim, Dockyu (Division of Life Sciences, Korea Polar Research Institute) Sul, Woo Jun (Department of Systems Biotechnology, Chung-Ang University) |
1 | Chin, C.S., Alexander, D.H., Marks, P., Klammer, A.A., Drake, J., Heiner, C., Clum, A., Copeland, A., Huddleston, J., Eichler, E.E., et al. 2013. Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat. Methods 10, 563-569. DOI |
2 | Conesa, A., Gotz, S., Garcia-Gomez, J.M., Terol, J., Talon, M., and Robles, M. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21, 3674-3676. DOI |
3 | Delcher, A.L., Bratke, K.A., Powers, E.C., and Salzberg, S.L. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23, 673-679. DOI |
4 | Kurtz, S., Phillippy, A., Delcher, A.L., Smoot, M., Shumway, M., Antonescu, C., and Salzberg, S.L. 2004. Versatile and open software for comparing large genomes. Genome Biol. 5, R12. DOI |
5 | Lagesen, K., Hallin, P., Rodland, E.A., Staerfeldt, H.H., Rognes, T., and Ussery, D.W. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35, 3100-3108. DOI |
6 | Lowe, T.M. and Eddy, S.R. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964. DOI |
7 | Park, H.J., Chae, N., Sul, W.J., Lee, B.Y., Lee, Y.K., and Kim, D. 2015. Temporal changes in soil bacterial diversity and humic substances degradation in subarctic tundra soil. Microb. Ecol. 69, 668-675. DOI |
![]() |