Implications of Streptomyces coelicolor RraAS1 as an activator of ribonuclease activity of Escherichia coli RNase E |
Heo, Jihune
(Department of Life Science, Chung-Ang University)
Seo, Sojin (Department of Life Science, Chung-Ang University) Lee, Boeun (Department of Life Science, Chung-Ang University) Yeom, Ji-Hyun (Department of Life Science, Chung-Ang University) Lee, Kangseok (Department of Life Science, Chung-Ang University) |
1 | Gao, J., Lee, K., Zhao, M., Qiu, J., Zhan, X., Saxena, A., Moore, C.J., Cohen, S.N., and Georgiou, G. 2006. Differential modulation of E. coli mRNA abundance by inhibitory proteins that alter the composition of the degradosome. Mol. Microbiol. 61, 394-406. DOI |
2 | Ghora, B.K. and Apirion, D. 1978. Structural analysis and in vitro processing to p5 rRNA of a 9S RNA molecule isolated from an rne mutant of E. coli. Cell 15, 1055-1066. DOI |
3 | Gorna, M.W., Pietras, Z., Tsai, Y.C., Callaghan, A.J., Hernandez, H., Robinson, C.V., and Luisi, B.F. 2010. The regulatory protein RraA modulates RNA-binding and helicase activities of the E. coli RNA degradosome. RNA 16, 553-562. DOI |
4 | Hagege, J.M. and Cohen, S.N. 1997. A developmentally regulated Streptomyces endoribonuclease resembles ribonuclease E of Escherichia coli. Mol. Microbiol. 25, 1077-1090. DOI |
5 | Jain, C. and Belasco, J.G. 1995. RNase E autoregulates its synthesis by controlling the degradation rate of its own mRNA in Escherichia coli: unusual sensitivity of the rne transcript to RNase E activity. Genes Dev. 9, 84-96. DOI |
6 | Kido, M., Yamanaka, K., Mitani, T., Niki, H., Ogura, T., and Hiraga, S. 1996. RNase E polypeptides lacking a carboxyl-terminal half suppress a mukB mutation in Escherichia coli. J. Bacteriol. 178, 3917-3925. DOI |
7 | Ahn, S., Shin, E., Yeom, J.H., and Lee, K. 2008. Modulation of Escherichia coli RNase E action by RraAS2, a Streptomyces coelicolor ortholog of RraA. Korean J. Microbiol. 44, 93-97. |
8 | Callaghan, A.J., Aurikko, J.P., Ilag, L.L., Gunter Grossmann, J., Chandran, V., Kuhnel, K., Poljak, L., Carpousis, A.J., Robinson, C.V., Symmons, M.F., et al. 2004. Studies of the RNA degradosome-organizing domain of the Escherichia coli ribonuclease RNase E. J. Mol. Biol. 340, 965-979. DOI |
9 | Kim, J.M., Song, W.S., Kim, H.L., Go, H., and Lee, K. 2007. Identification and functional analysis of proteins interacting with Streptomyces coelicolor RNase ES. Korean J. Microbiol. 43, 72-75. |
10 | Lee, K., Bernstein, J.A., and Cohen, S.N. 2002. RNase G complementation of rne null mutation identifies functional interrelationships with RNase E in Escherichia coli. Mol. Microbiol. 43, 1445-1456. DOI |
11 | Sim, S.H., Yeom, J.H., Shin, C., Song, W.S., Shin, E., Kim, H.M., Cha, C.J., Han, S.H., Ha, N.C., Kim, S.W., et al. 2010. Escherichia coli ribonuclease III activity is downregulated by osmotic stress: consequences for the degradation of bdm mRNA in biofilm formation. Mol. Microbiol. 75, 413-425. DOI |
12 | Lee, K. and Cohen, S.N. 2003. A Streptomyces coelicolor functional orthologue of Escherichia coli RNase E shows shuffling of catalytic and PNPase-binding domains. Mol. Microbiol. 48, 349-360. DOI |
13 | Lee, M., Yeom, J.H., Sim, S.H., Ahn, S., and Lee, K. 2009. Effects of Escherichia coli RraA orthologs of Vibrio vulnificus on the ribonucleolytic activity of RNase E in vivo. Curr. Microbiol. 58, 349-353. DOI |
14 | Lee, K., Zhan, X., Gao, J., Qiu, J., Feng, Y., Meganathan, R., Cohen, S.N., and Georgiou, G. 2003. RraA. a protein inhibitor of RNase E activity that globally modulates RNA abundance in E. coli. Cell 114, 623-634. DOI |
15 | Mudd, E.A. and Higgins, C.F. 1993. Escherichia coli endoribonuclease RNase E: autoregulation of expression and site-specific cleavage of mRNA. Mol. Microbiol. 9, 557-568. DOI |
16 | Pietras, Z., Hardwick, S.W., Swiezewski, S., and Luisi, B.F. 2013. Potential regulatory interactions of Escherichia coli RraA protein with DEAD-box helicases. J. Biol. Chem. 288, 31919-31929. DOI |
17 | Singh, D., Chang, S.J., Lin, P.H., Averina, O.V., Kaberdin, V.R., and Lin-Chao, S. 2009. Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli. Proc. Natl. Acad. Sci. USA 106, 864-869. DOI |
18 | Yeom, J.H., Go, H., Shin, E., Kim, H.L., Han, S.H., Moore, C.J., Bae, J., and Lee, K. 2008b. Inhibitory effects of RraA and RraB on RNAse E-related enzymes imply conserved functions in the regulated enzymatic cleavage of RNA. FEMS Microbiol. Lett. 285, 10-15. DOI |
19 | Yeom, J.H., Shin, E., Go, H., Sim, S.H., Seong, M.J., and Lee, K. 2008a. Functional implications of the conserved action of regulators of ribonuclease activity. J. Microbiol. Biotechnol. 18, 1353-1356. |
20 | Yeom, J.H. and Lee, K. 2006. RraA rescues Escherichia coli cells over-producing RNase E from growth arrest by modulating the ribonucleolytic activity. Biochem. Biophys. Res. Commun. 345, 1372-1376. DOI |