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http://dx.doi.org/10.7845/kjm.2016.6006

Phylogenetic characteristics of actinobacterial population in bamboo (Sasa borealis) soil  

Lee, Hyo-Jin (Institute of Microbial Ecology and Resources, Mokwon University)
Han, Song-Ih (Department of Microbial & Nano Materials, Mokwon University)
Whang, Kyung-Sook (Institute of Microbial Ecology and Resources, Mokwon University)
Publication Information
Korean Journal of Microbiology / v.52, no.1, 2016 , pp. 59-64 More about this Journal
Abstract
In this study, a pyrosequencing was performed and analyzed to verify the phylogenetic diversity of actinomycetes in the bamboo (Sasa borealis) soil as a base study to obtain the genetic resources of actinomycetes. It was found that the rhizosphere soil had much various distribution in bacterial communities showing a diversity of 8.15 with 2,868 OTUs, while the litter layer showed a diversity of 7.55 with 2,588 OTUs. The bacterial community in the bamboo soil was composed of 35 phyla and the predominant phyla were Proteobacteria (51-60%), Bacteroidetes (16-20%), Acidobacteria (4-16%) and Actinobacteria (4-14%). In particular, Actinobacteria including Micromonosporaceae and Streptomycetaceae had a diverse distribution of actinomycetes within the six orders, 35 families and 121 genera, and it was characterized that about 83% of actinomycetes within Actinomycetales belonged to the 28 families. Among the dominant actinobacterial populations, Micromonosporaceae, Pseudonocardiaceae and Streptomycetaceae were representative family groups in the bamboo soils.
Keywords
Actinomycetales; actinobacterial diversity; bamboo (Sasa borealis); pyrosequencing;
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