Molecular diversity of endobacterial communities in edible part of King oyster mushroom (Pleurotus eryngii) based on 16S rRNA
![]() |
Lee, Choung Kyu
(Department of Forest Resources, Gyeongnam National University of Science and Technology)
Haque, Md. Azizul (Department of Food Science, Gyeongnam National University of Science and Technology) Choi, Byoung Rock (Department of Future Farming, Sacheon Agricultural Development & Technology Center) Lee, Hee Yul (Department of Food Science, Gyeongnam National University of Science and Technology) Hwang, Chung Eun (Department of Food Science, Gyeongnam National University of Science and Technology) Ahn, Min Ju (Department of Food Science, Gyeongnam National University of Science and Technology) Cho, Kye Man (Department of Food Science, Gyeongnam National University of Science and Technology) |
1 | Barbieri, E., Bertini, L., Rossi, I., Ceccaroli, P., Saltarelli, R., Guidi, C., Zambonelli, A., and Stocchi, V. 2005. New evidence for bacterial diversity in the ascoma of the ectomycorrhizal fungus Tuber borchii Vittad. FEMS Microbiol. Lett. 247, 23-35. DOI |
2 | Barbieri, E., Potenza, L., Rossi, I., Sisti, D., Giomaro, G., Rossetti, S., Beinfohr, C., and Stocchi, V. 2000. Phylogenetic characterisation and in situ detection of a Cytophaga-Flexibacter-Bacteroides phylogroup bacterium in Tuber borchii Vittad. ectomycorrhizal mycelium. Appl. Environ. Microbiol. 66, 5035-5042. DOI |
3 | Barbieri, E., Riccioni, G., Pisano, A., Sisti, D., Zeppa, S., Agostini, D., and Stocchi, V. 2002. Competitive PCR for quantitation of a Cytophaga-Flexibacter-Bacteroides phylum bacterium associated with the Tuber borchii Vittad. mycelium. Appl. Environ. Microbiol. 68, 6421-6424. DOI |
4 | Bedini, S., Bagnoli, G., Sbrana, C., Leporini, C., Tola, E., Dunne, C., Filippi, C., D'Andrea, F., O'Gara, F., and Nuti, M.P. 1999. Pseudomonas isolated from within fruit bodies of Tuber borchi are capable of producing biological control or photostimulatory compounds in pure culture. Symbiosis 26, 223-236. |
5 | Bertaux, J., Schmid, M., Prevost-Boure, N.C., Churin, J.L., Hartmann, A., Garbaye, J., and Frey-Klett, P. 2003. In situ identification of intracellular bacteria related to Paenibacillus spp. in the mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Appl. Environ. Microbiol. 69, 4243-4248. DOI |
6 | Bertaux, J., Schmid, M., Hutzler, P., Hartmann, A., Garbaye, J., and Frey-Klett, P. 2005. Occurrence and distribution of endobacteria in the plant-associated mycelium of the ectomycorrhizal fungus Laccaria bicolor S238N. Environ. Microbiol. 7, 1786-1795. DOI |
7 | Bianciotto, V., Bandi, C., Minerdi, D., Sironi, M., Tichy, H.V., and Bonfante, P. 1996. An obligately endosymbiotic mycorrhizal fungus itself harbors obligately intracellular bacteria. Appl. Environ. Microbiol. 62, 3005-3010 |
8 | Fell, J.W., Boekhout, T., Fonseca, A., Scorzetti, G., and Statzell-Tallman, A. 2000. Biodiversity and systematics of basidiomycetous yeasts as determined by large-subunit rDNA D1/D2 domain sequence analysis. Int. J. Syst. Evol. Microbiol. 50, 1351-1371. DOI |
9 | Frey-Klett, P., Chavatte, M., Clausse, M.L., Courrier, S., Le Roux, C., Raaijmakers, J., Martinotti, M.G., Pierrat, J.C., and Garbaye, J. 2005. Ectomycorrhizal symbiosis affects functional diversity of rhizosphere fluorescent pseudomonads. New Phytol. 165, 317-328. |
10 | Frey, P., Frey-Klett, P., Garbaye, J., Berge, O., and Heulin, T. 1997. Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the douglas fir Laccaria bicolor mycorrhizosphere. Appl. Environ. Microbiol. 63, 1852-1860. |
11 | Gao, X.X., Zhou, H., Xu, D.Y., Yu, C.H., Chen, Y.Q., and Qu, L.H. 2005. High diversity of endophytic fungi from the pharmaceutical plant, Heterosmilax japonica Kunth revealed by cultivationindependent approach. FEMS Microbiol. Lett. 249, 255-266. DOI |
12 | Kang, Y.M. and Cho, K.M. 2014. Identification of auxin from Pseudomonas sp. P7014 for the rapid growth of Pleurotus eryngii mycelium. Korean J. Microbiol. 50, 15-21. DOI |
13 | Gazzanelli, G., Malatesta, M., Pianetti, A., Baffone, W., Stocchi, V., and Citterio, B. 1999. Bacteria associated to fruit bodies of the ecto-mycorrhizal fungus Tuber borchii Vittad. Symbiosis 26, 211-219. |
14 | Hall, I.R., Yun, W., and Amicucci, A. 2003. Cultivation of edible ectomycorrhizal mushrooms. Trends Biotechnol. 21, 433-438. DOI |
15 | Hashiba, T. and Narisawa, K. 2005. The development and endophytic nature of the fungus Heteroconium chaetospira. FEMS Microbiol. Lett. 252, 191-196. DOI |
16 | Lane, D.J. 1991. 16S/23S rRNA sequencing. Nucleic acids techniques in bacterial systematics, p. 115. In Stackebrandt, E. and Goodfellow, M. (eds.) John Wiley and Sons, Chicester, UK. |
17 | Madden, T.L., Tatusov, R.L., and Zhang, J. 1996. Applications of network BLAST server. Methods Enzymol. 266, 131-141. DOI |
18 | Maidak, B.L., Cole, J.R., Lilburn, T.G., Parker Jr., C.T., Saxman, P.R., Stredwick, J.M., Garrity, G.M., Li, B., Olsen, G.J., Pramanik, S., et al. 2000. The RDP (Ribosomal Database Project) continues. Nucleic Acids Res. 28, 173-174. DOI |
19 | Moran, N.A. and Wernegreen, J.J. 2000. Life style evolution in symbiotic bacteria: insights from genomics. Trends Ecol. Evol. 15, 321-326. DOI |
20 | Morioka, M. and Ishikawa, H. 1993. Self-assembly of symbionin, a chaperonin of intracellular symbiont. J. Biochem. 114, 468-472. DOI |
21 | Mota, L.J., Sorg, I., and Cornelis, G.R. 2005. Type III secretion: The bacteria-eukaryotic cell express. FEMS Microbiol. Lett. 252, 1-10. DOI |
22 | Ruiz-Duenas, F.J. and Martinez, M.J. 1996. Enzymatic activities of Trametes versicolor and Pleurotus eryngii implicated in biocontrol of Fusarium oxysporum f. sp. lycopersici. Curr. Microbiol. 32, 151-155. DOI |
23 | Paster, B.J., Dewhirst, F.E., Weisburg, W.G., Tordoff, L.A., Fraser, G.J., Hespell, R.B., Stanton, T.B., Zablen, L., Mandelco, L., and Woese, C.R. 1991. Phylogenetic analysis of the spirochetes. J. Bacteriol. 173, 6101-6109. DOI |
24 | Perotti, R. 1926. On the limits of biological enquiry in soil science. Proc. Int. Soc. Soil Sci. 2, 146-161 |
25 | Philippoussis, A., Zervakis, G., and Diamantopoulou, P. 2001. Bioconversion of agricultural lignocellulosic wastes through the cultivation of the edible mushrooms Agrocybe aegerita, Volvariella volvacea and Pleurotus spp. World J. Microbiol. Biotechnol. 17, 191-200. DOI |
26 | Saitou, N. and Nei, M. 1997. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425. |
27 | Sbrana, C., Agnolucci, M., Bedini, S., Lepera, A., Toffanin, A., Giovannetti, M., and Nuti, M.P. 2002. Diversity of culturable bacterial populations associated to Tuber borchii ectomycorrhizas and their activity on T. borchii mycelial growth. FEMS Microbiol. Lett. 211, 195-201. DOI |
28 | Sbrana, C., Bagnoli, G., Bedini, S., Filippi, C., Giovannetti, M., and Nuti, M.P. 2000. Adhesion to hyphal matrix and antifungal activity of Pseudomonas strains isolated from Tuber borchii ascocarps. Can. J. Microbiol. 46, 259-268. DOI |
29 | Schussler, A. and Kluge, M. 2000. Geosiphon pyriforme, an endocytosymbiosis between fungus and cyanobacteria, and its meaning as a model system for AM research, p. 151. The mycota IX (ed.), In Hock, B. (ed.). Springer Verlag, Berlin, Germany |
30 | Schußler, A., Schwarzott, D., and Walker, C. 2001. A new fungal phylum, the Glomeromycota: phylogeny and evolution. Mycol. Res. 105, 1413-1421. DOI |
31 | Schulz, B., Boyle, C., Draeger, S., Rommert, A.K., and Krohn, K. 2002. Endophytic fungi: a source of novel biologically active secondary metabolites. Mycol. Res. 106, 996-1004. DOI |
32 | Steyn, P.L., Segers, P., Vancanneyt, M., Sandra, P., Kersters, K., and Joubert, J.J. 1998. Classification of heparinolytic bacteria into a new genus, Pedobacter, comprising four species: Pedobacter heparinus comb. nov., Pedobacter piscium comb. nov., Pedobacter africanus sp. nov. and Pedobacter saltans sp. nov. proposal of the family Sphingobacteriaceae fam. nov. Int. J. Syst. Bacteriol. 48, 165-177. DOI |
33 | Timonen, S., Jorgensen, K.S., Haahtela, K., and Sen, R. 1998. Bacterial community structure at defined locations of Pinus sylvestris-Suillus bovinus and Pinus sylvestris-Paxillus involutus mycorrhizospheres in dry pine forest humus and nursery peat. Can. J. Microbiol. 44, 499-513. DOI |
34 | Tompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680. DOI |
35 | Wang, H. and Ng, T.B. 2004. Eryngin, a novel antifungal peptide from fruiting bodies of the edible mushroom Pleurotus eryngiij Peptides 25, 1-5. DOI |
36 | Wasser, S.P. and Weis, A.L. 1999. Medicinal properties of substances occurring in higher Basidiomycetes mushrooms: current perspectives. Int. J. Med. Mushr. 1, 47-50. |
![]() |