Cyanobacterial Diversity Analysis Using cpcBA-Intergenic Spacer Region |
Choi Gang-Guk
(Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology)
Park Yong-Ha (Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology) Ahn Chi-Yong (Environmental Biotechnology Laboratory, Korea Research Institute of Bioscience and Biotechnology) Bae Myoung-Sook (Environmental Biotechnology Laboratory, Korea Research Institute of Bioscience and Biotechnology) Oh Hee-Mock (Environmental Biotechnology Laboratory, Korea Research Institute of Bioscience and Biotechnology) |
1 | Crosbie, N.D., M. Pockl, and T. Weisse. 2003. Dispersal and phylogenetic diversity of nonmarine picocyanobacteria, inferred from 16S rRNA gene and cpcBA-intergenic spacer sequence analyses. Appl. Environ. Microbiol. 69, 5716-5721 DOI ScienceOn |
2 | Dyble, J., H.W. Paerl, and B.A. Neilan. 2002. Genetic characterization of Cylindrospermopsis raciborskii (cyanobacteria) isolates from diverse geographic origins based on nifH and cpcBA-IGS nucleotide sequence analysis. Appl. Environ. Microbiol. 68, 2567-2571 DOI ScienceOn |
3 | Go, S.-R., S.-J.Park, C.-Y. Ahn, A. Choi, J.-S. Lee, H.-S. Kim, B.-D. Yoon, and H.-M. Oh. 2004. Analysis of microbial communities during cyanobacterial bloom in Daechung Reservoir by DGGE. Kor. J. Microbiol. 40, 205-210 |
4 | Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 PUBMED |
5 | Savin, M.C., J.L. Martin, M. LeGresley, M. Giewat, and J. Rooney- Varga. 2004. Plankton diversity in the Bay of Fundy as measured by morphological and molecular methods. Microb. Ecol. 48, 51-65 DOI ScienceOn |
6 | Suh, M.Y., B.H. Kim, and M.S. Han. 2005. Distribution of cyanotoxin microcystin-LR in Han River system and ecological park in Seoul and Kyunggi districts. Korean J. Limnol. 38, 237-248 |
7 | Wood, L.W. 1985. Chloroform-methanol extraction of chlorophyll-a. Can. J. Fish. Aquat. Sci. 42, 38-43 DOI |
8 | Robertson, B.R., N. Tezuka, and M.M. Watanabe. 2001. Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content. Int. J. Syst. Evol. Microbiol. 51, 861-871 DOI PUBMED ScienceOn |
9 | Bruns, A., U. Nubel, H. Cypionka, and J. Overmann. 2003. Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton. Appl. Environ. Microbiol. 69, 1980-1989 DOI ScienceOn |
10 | 전만식, Y. Watanabe, 김범철. 1998. 하천수중에서 식물 플랑크톤의 증식에 대한 희석율과 온도의 영향. 한국육수학회지 31, 328-336 |
11 | Muyzer, G. 1999. DGGE/TGGE a method for identifying genes from natural ecosystems. Curr. Opin. Microbiol. 2, 317-322 DOI PUBMED ScienceOn |
12 | Lee, S.Y. and S.H. Kim. 2003. Genetic variation and discrimination of Korean arkshell Scapharca species (Bivalvia, Arcoida) based on mitochondrial COI gene sequences and PCR-RFLP. Korean J. Genetics 25, 309-315 |
13 | Zwart, G., M.P. Kamst-van Agterveld, I. van der Werff-Staverman, F. Hagen, H.L. Hoogveld, and H.J. Gons. 2005. Molecular characterization of cyanobacterial diversity in a shallow eutrophic lake. Environ. Microbiol. 7, 365-377 DOI ScienceOn |
14 | Gonzalez, J.M., A. Ortiz-Martinez, M.A. Gonzalez-delValle, L. Laiz, and C. Saiz-Jimenez. 2003. An efficient strategy for screening large cloned libraries of amplified 16S rDNA sequences from complex environmental communities. J. Microbiol. Methods 55, 459-463 DOI ScienceOn |
15 | Liu, W.T. and L. Zhu. 2005. Environmental microbiology-on-achip and its future impacts. Trends Biotechnol. 23, 174-179 DOI ScienceOn |
16 | Ahn, C.-Y., H.-S. Kim, B.-D. Yoon, and H.-M. Oh. 2003. Influence of rainfall on cyanobacterial bloom in Daechung reservoir. Korean J. Limnol. 36, 413-419 |
17 | Felsenstein, J. 2004. PHYLIP (Phylogeny Inference Package) version 3.6. The web distributed by the author. Department of Genome Sciences, University of Washington, Seattle |
18 | Lepp, P.W. and T.M. Schmidt. 2004. Changes in Synechococcus population size and cellular ribosomal RNA content in response to predation and nutrient limitation. Microb. Ecol. 48, 1-9 DOI ScienceOn |
19 | Lee, H.K., J.H. Kim, C.K. Kim, and D.H. Lee. 2004. Molecular characterization of the bacterial community in activated sludges by PCR-RFLP. Kor. J. Microbiol. 40, 307-312 |
20 | Kim, J.-H. and H.-Y. Jang. 2004. 16S rDNA-PCR and RFLP analysis for rapid indentification of spoilage bacteria from low salt cucumber brine. Korean J. Biotech. Bioeng. 19, 72-77 |
21 | Muyzer, G. and K. Smalla. 1998. Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology. Antonie Van Leeuwenhoek 73, 127-141 DOI ScienceOn |
22 | Janse, I., M. Meima, W.E. Kardinaal, and G. Zwart. 2003. High-resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 69, 6634-6643 DOI ScienceOn |
23 | Francois, E., D.Y. Wang, R. Fulthorpe, S.N. Liss, and E.A. Edwards. 2003. DNA microarrays for detecting endocrine-disrupting compounds. Biotechnol. Adv. 22, 17-26 DOI ScienceOn |
24 | Hartmann, M., B. Frey, R. Kolliker, and F. Widmer. 2005. Semiautomated genetic analyses of soil microbial communities: comparison of T-RFLP and RISA based on descriptive and discriminative statistical approaches. J. Microbiol. Methods 61, 349-360 DOI ScienceOn |
25 | Horz, H.P., M.T. Yimga, and W. Liesack. 2001. Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mxaF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling. Appl. Environ. Microbiol. 67, 4177-4185 DOI ScienceOn |
26 | Lyra, C., S. Suomalainen, M. Gugger, C. Vezie, P. Sundman, L. Paulin, and K. Sivonen. 2001. Molecular characterization of planktic cyanobacteria of Anabaena, Aphanizomenon, Microcystis and Planktothrix genera. Int. J. Syst. Evol. Microbiol. 51, 513-526 DOI PUBMED |
27 | Dunbar, J., L.O. Ticknor, and C.R. Kuske. 2000. Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl. Environ. Microbiol. 66, 2943-2950 DOI ScienceOn |
28 | Rudi, K., J. Treimo, H. Nissen, and G. Vegarud. 2003. Protocols for 16S rDNA array analyses of microbial communities by sequence-specific labeling of DNA probes. TheScientificWorldJOURNAL 3, 578-584 DOI |
29 | Crosbie, N.D., M. Pockl, and T. Weisse. 2003. Rapid establishment of clonal isolates of freshwater autotrophic picoplankton by single-cell and single-colony sorting. J. Microbiol. Methods 55, 361-370 DOI ScienceOn |