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http://dx.doi.org/10.5657/kfas.2009.42.2.146

Genetic Variation of the Three Pampus spp. (Pisces: Stromateidae) using Amplified Fragment Length Polymorphism (AFLP)  

Yoon, Young-Eun (Department of Marine Biotechnology, Soonchunhyang University)
Park, Sang-Yong (Department of Marine Biotechnology, Soonchunhyang University)
Bae, Joo-Seung (Incheon Fisheries Office, Incheon Metropolitan City)
Bang, In-Chul (Department of Marine Biotechnology, Soonchunhyang University)
Publication Information
Korean Journal of Fisheries and Aquatic Sciences / v.42, no.2, 2009 , pp. 146-150 More about this Journal
Abstract
Genetic variation and relationship of two wild (Pampus argenteus and P. echinogaster) and one cultured (P. chinesis) pomfret fish belonging to the genus Pampus were assessed. Specimens were collected from Korea and China and subjected to amplified fragment length polymorphism (AFLP) DNA fingerprinting. Four primer combinations generated a total of 304 DNA fragments ranging from 153 to 251 bands. Polymorphism and genetic diversity of cultured P. chinensis (22.9% and 0.038) were significantly lower than the two wild species of P. argenteus (93.6% and 0.311) and P. echinogaster (94.0% and 0.290). Genetic distance ranged from 0.335 (P. argenteus and P. echinogaster) to 0.646 (P. argenteus and P. chinensis) and showed a congeneric relationship within this genus. Twenty one of specific AFLP markers from four primer combinations bands were produced. These results suggest that AFLP polymorphism may be a useful marker for genetic identification among the three species studies here.
Keywords
Pampus argenteus; P. echinogaster; P. chinensis; AFLP; Genetic variations;
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  • Reference
1 Kang, Y.J., D.W. Lee. B.Q. Hong and Y.S. Kim. 1989. Studies on the fishery biology of pomfrets, Pampus spp. in the Korean waters. 3. Age and growth of Korean pomfret, Pampus echinogaster, from the China Sea. Bull. Korean Fish. Soc., 22, 281-290
2 Kim, I.S., Y. Choi, C.L. Lee, Y.J. Lee, B.J. Kim and J.H. Kim. 2005. Illustrated book of Korean fishes. Kyo-Hak Publ. Co., Ltd., Seoul, 1-615
3 Liu, J. and C.S. Li. 1998. Redescription of stromateoid fish Pampus punctatissimus and comparison with Pampus argenteus from Chinese coastal waters. Chin.J. Oceanol. Limnol., 16, 161-166   DOI   ScienceOn
4 Miller, M. 1997. Tools for population genetic analysis (TFPGA) 1.3: a windows program for the analysis of allozyme and molecular population genetic data. Computer software distributed by author
5 Murakaeva, A., K. Kohlmann, P. Kersten, B. Kamilov and D. Khabibullin. 2003. Genetic characterization of wild and domesticated common carp (Cyprinus carpio L.) populations from Uzbekistan. Aquacult., 218, 153-166   DOI   ScienceOn
6 Cho, K.D., J.C. Kim and Y.K. Choe. 1989. Studies on the fishery biology of pomfrets, Pampus spp. in the Korean waters 5. Distribution and fishing condition. Bull. Korean Fish. Soc., 22, 294-305
7 Roa, A.C., M.M. Maya, M.C. Duque, J. Tohme, A.C. Allem and M.W. Bonierbale. 1997. AFLP analysis of relationships among cassava and other Manihot species. Theor. Appl. Genet., 95, 741-746   DOI   ScienceOn
8 Skaala, O., B. Høyheim, K. Gloverand and G. Dahle. 2004. Microsatellite analysis in domesticated and wild Atlantic salmon (Salmo salar L.): allelic diversity and identification of individuals. Aquacult., 240, 131-143   DOI   ScienceOn
9 Kim, Y.U. and K.H. Han. 1989. Studies on the fishery biology of pomfrets, Pampus spp. in the Korean waters. 1. Morphology of the two species of the genus Pampus. Bull. Korean Fish. Soc., 22, 241-265
10 Nei, M. and W.H. Li. 1979. Mathematical model for studing genetical variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. USA, 70, 3321-3323   DOI   ScienceOn
11 Chen, D., C. Zhang, C. Liv. Y. Chang and J. Chang. 2005. Amplified fragment length polymorphism analysis to identify the genetic structure of the Gymnocypris przewalskii (Kessler, 1876) population from the Qinghai Basin, China. J. Appl. Ichthrol., 21, 178-183   DOI   ScienceOn
12 Seki, S., J.J. Agresti, G.A.E. Gall, N. Taniguchi and B. May 1999. AFLP analysis of genetic diversity in three populations of ayu, Plecoglossus altivelis. Fish. Sci., 65, 888-892   DOI
13 Dolganov, V.N., V.E. Kharin and V.V. Zemnukhov. 2007. Species composition and distribution of butterfishes (Stromateidae) in waters of Russia. J. Ichthyol., 47, 579-584   DOI   ScienceOn
14 Rohlf, S.B. 1992. NTSYS-pc numerical taxonomy and multivariate analysis system, version 1.7. Applied Biostatistics Inc., New York, USA
15 Xu, X., Q. Zhang, Z. Wang, J. Qi, Z. Zhang, Z. Bao and H. Nakagawa. 2006. Assessing genetic diversity of wild populations of Japanese flounder using AFLP markers. Acta Oceanologica Sinica, 25, 82-89
16 Ward, R.D., M. Woodwark and D.O.F. Skibinski. 1994. A comparison of genetic diversity levels in marine, freshwater, and anadromous fishes. J. Fish. Biol., 44, 213-232   DOI   ScienceOn
17 Yang, W.T., J. Li and G.H. Yue. 2006. Multiplex genotyping of novel microsatellites from silver pomfret (Pampus argenteus) and cross-amplification in other pomfret species. Mol. Ecol. Notes., 6, 1073-1075   DOI   ScienceOn
18 Hedgeccock, D. 1994 Does variance in reproductive success limit effective population sizes of marine organisms? In: Genetics and Evolution of Aquatic Organisms, Beaumont A.R., ed. Chapman and Hall, London, pp. 122-134
19 Nelson, J.S. 2006. Fishes of the world. John Wiley and Sons, Inc. New York. 4th edition., 1-601
20 Xia, J. and S. Jiang. 2006. Genetic structure of yellowback sea bream Dentex tumifrons in China inferred from AFLP data. Fish. Sci., 72, 829-834   DOI   ScienceOn
21 Vos, P., R. Hodgers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper and M. Zabeau. 1995. AFLP, a new technique for DNA fingerprinting. Nucl. Acids Res., 23, 4407-4414   DOI   ScienceOn
22 Thorpe, J.P. and A.M. Sole-Cava. 1994. The use of allozyme electrophoresis in invertebrate systematic. Zool. Scr., 23, 3-18   DOI   ScienceOn
23 Schineider, S., D. Roessli and L. Excoffier. 2000. Arlequin ver. 2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland
24 Asahida, T., T. Kobayashi, K. Saitoh and I. Nakayama. 1996. Tissue preservation and total DNA extraction from fish stored at ambient temperature using buffers containing high concentration of urea. Fish. Sci., 62, 727-730   DOI   ScienceOn
25 Huh, S.H. 1989. Studies on the fishery biology of pomfrets, Pampus spp. in the Korean waters. 4. Food of Pampus echinogaster. Bull. Korean Fish. Soc., 22, 291-293
26 Lee, T.Y. and J.J. Jin. 1989. Studies on the fishery biology of pomfrets, Pampus spp. in the Korean waters. 2. Gonadal maturation and spawning. Bull. Korean Fish. Soc., 22, 266-280
27 Liu, Z.J. and J.F. Cordes. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquacult., 238, 1-37   DOI   ScienceOn
28 Shaklee, J.B. and P. Pauly. 1982. Speciation and evolution of marine fishes studied by the electrophoretic analysis of proteins. Pac. Sci., 36, 141-157