Sequence Analysis of Nuclear 18S rDNA from the Seaweed Porphyra yezoensis (Rhodophyta) in Korea |
Jin Long Guo
(Department of Biotechnology, Pukyong National University)
Kim Myung Sook (Department of Biotechnology, Pukyong National University) Choi Jae Suk (Department of Biotechnology, Pukyong National University) Cho Ji Young (Department of Biotechnology, Pukyong National University) Jin Hyung Joo (Department of Biotechnology, Pukyong National University) Hong Yong Ki (Department of Biotechnology, Pukyong National University) |
1 | White, T.J., T. Bruns, S. Lee and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR Protocols: A Guide to Methods and Applications. Innis, M., J. Gelfand, J. Sninsky, and T. White eds., Academic Press, Florida, 315-322 |
2 | Williams, S.M., RW. DeBry and J. Feder. 1988. A commentary on the use of ribosomal DNA in systematic studies. Syst. Zool., 37, 60-62 DOI ScienceOn |
3 | Jin, L.G., M.S. Kim, Y.D. Kim, H.G. Kim and Y.K. Hong. 2001. Sequence Analysis of Nuclear 18S rDNA from Porphyra pseudotineans (Rhodophyta) in korea. Algae, 16, 277-282 |
4 | Kang, J.W. 1970. Species of cultivated Porphyra in Korea. J. Kor. Fish. Soc., 3, 77-92 DOI |
5 | Kunimoto, M., H. Kito, Y. Kaminishi, Y. Mizukami and N. Murase 1999. Molecular divergence of the ssu rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta). J. Appl. Phycol., 11, 211-216 DOI ScienceOn |
6 | Kurogi, M. 1972. Systematics of Porphyra in Japan. In: Contributions to the Systematics of Benthic Marine Algae of the North Pacific. Abbott, I. A. and Kurogi, M. eds. Jap. Soc. Phycol., Kobe, 167-191 |
7 | Lee, I.K. and J.W. Kang. 1986. A check list of marine alage in Korea. Kor. J. Phycol., 1, 311-325 |
8 | Lindstrom, S.C. and K.M. Cole. 1992. Relationships between some North Atlantic and North Pacific species of Porphyra (Bangiales, Rhodophyta): Evidence from isozymes, morphology, and chromosomes. Can. J. Bot, 70, 2066-2075 DOI |
9 | Nicholas, K.B., H.B. Nicholas Jr and D.W. Deerfield. 1997. GeneDoc: Analysis and visualization of genetic variation. EMBNEW News, 4, 14 |
10 | Oliveira, M.C, J. Kumiawan, CJ. Bird, E.L. Rice, CA. Murphy, R.K. Singh, R.R. Gutell and MA Ragan. 1995. A preliminary investigation of the order Bangiales (Bangiophycidae, Rhodophyta) based on sequences of nuclear small-subunit ribosomal RNA genes. Phycol. Res., 43, 71-79 DOI |
11 | Park, J.W., Y.C. Cho, B.H. Nam, H.J. Jin, C.H. Sohn and Y.K. Hong. 1998. RAPD identification of genetic variation in the seaweed Hizikia fusiformis. J. Mar. Biotechnol., 6, 62-64 |
12 | Brodie, J., P.K. Hayes, G.L. Barker and L.M. Irvine. 1996. Molecular and morphological characters distinguishing two Porphyra species (Rhodophyta, Bangiophycidae). Eur. J. Phycol., 31, 303-308 DOI ScienceOn |
13 | Brodie, J., P.K. Hayes, G.L. Barker, L.M. Irvine and I. Bartsch. 1998. A reappraisal of Porphyra and Bangia (Bangiophycidae, Rhodophyta) in the northeast Atlantic based on the rbcL-rbcS intergenic spacer. J. Phycol., 34, 1069-1074 DOI ScienceOn |
14 | Dutcher, J.A. and D.F. Kapraun. 1994. Random amplified polymorphic DNA (RAPD) identification of genetic variation in three species of Porphyra (Bangiales, Rhodophyta). J. Appl. Phycol., 6, 267-273 DOI ScienceOn |
15 | Hendriks, L., R. De Baere, Y. Van De Peer, J. Neefs, A. Goris and R. Dewatcher. 1991. The evolutionary position of the rhodophyte Porphyra umbilicalis and the basidiomycete Leucosporidium scottii among other eukaryotes as deduced from complete sequences of small ribosomal subunit RNA. J. Mol. Evol., 32, 167-177 DOI |
16 | Hillis, D.M. and M.T. Dixon. 1991. Ribosomal DNA: Molecular evolution and phylogenetic inference. Quart. Rev. Biol., 66, 411-453 DOI ScienceOn |
17 | Jeannmougin, F., J.D. Thompson, M. Gouy, D.G. Higgins and T.J. Gibson. 1998. Multiple sequence alignment with Clustal X. Trends Biochem. Sci., 23, 403-405 DOI ScienceOn |
18 | Hong, Y.K., S.D. Kim, M. Polne-Fuller and A. Gibor. 1995. DNA extraction conditions from Poyphyra perforata using LiCl. J. Appl. Phycol., 7, 101-107 DOI ScienceOn |
19 | Hwang, M.S., M.H. Han and I.K. Lee. 1998. Allozyme variation and species relationships in the genus Porphyra (Bangiales, Rhodophyta) from Korea. Algae, 13, 447-459 |
20 | Hwang, M.S. and I.K. Lee. 2001. Taxonomy of the Genus Porphyra (Bangiales, Rhodophyta) from Korea. Algae, 16, 233-273 |
21 | Shin, J.A., N. Morikawa, H. Akita and A. Miura. 1996. Polymerase chain reaction-based identification of varieties in Porphyra yezoensis (Bangiales, Rhodophyta). J. Aomori Univ. & Aomori Jr. Coll., 18, 101-106 |
22 | Altschul, S.F., W. Gish, W. Miller, E.W. Myers and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol., 215, 403-410 DOI |
23 | Altschul, S.F., T.L. Madden, A.A. Schaffer, J. Zhang, Z. Zhang, W. Miller and D.J. Lipman. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nuc. Acids Res., 25, 3389-3402 DOI ScienceOn |
24 | Araki, S., T. Sakurai, T. Oohusa and N. Sato. 1992. Comparative restriction endonuclease analysis of rhodoplast DNA from different species of Porphyra. Nippon Suisan Gakkaishi, 58, 477-480 DOI |
25 | Yamazald, S., Y. Kitade, T. Maruyama and N. Saga. 1996. Phylogenetic position of Porphyra yezoensis (Bangiales, Rhodophyta) based on the 18S rDNA sequence. J. Mar. Biotechnol., 4, 230-232 |
26 | 해양수산부. 2001. 해양수산 통계 연보. 크리홍보(주), 서울, 1439 |
27 | Sambrook, J., E.F. Fritsch and T. Maniatis. 1989. Molecular Cloning: A Laboratory Manual, 2nd ed., Cold Spring Harbor Laboratory Press, New York, 18.88 |
28 | Saunders, G.W. and L.D. Druehl. 1992. Nucleotide sequences of the small-subunit ribosomal RNA genes from selected Laminariales (Phaeophyta): Implications for kelp evolution. J. Phycol., 28, 544-549 DOI |
29 | Stiller, J.W. and J.R. Waaland. 1993. Molecular analysis revealscryp-tic diversity in Porphyra (Rhodophyta). J. Phycol., 29, 506-517 DOI ScienceOn |
30 | Tan, I.H. and L.D. Druehl. 1996. A ribosomal DNA phylogeny supports the close evolutionary relationships among the Sporochnales, Desmarestiales, and Laminanales (Phaeophyceae). J. Phycol., 32, 112-118 DOI |
31 | Van de Peer, Y. and R. De Wachter. 1994. TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput. App. Biosci.. 10, 569-570 |
32 | Van Oppen, M.J., J.L. Olsen and W.T. Stam. 1993. Evidence for independent acquisition of group I introns in green algae. Mol. Biol. Evol., 10, 1317-1326 |