Browse > Article
http://dx.doi.org/10.15701/kcgs.2019.25.3.123

Data Augmentation Method for Deep Learning based Medical Image Segmentation Model  

Choi, Gyujin (Department of Digital Media, Ajou University)
Shin, Jooyeon (Department of Digital Media, Ajou University)
Kyung, Joohyun (Department of Digital Media, Ajou University)
Kyung, Minho (Department of Digital Media, Ajou University)
Lee, Yunjin (Department of Digital Media, Ajou University)
Abstract
In this study, we modified CT images of femoral head in consideration of anatomically meaningful structure, proposing the method to augment the training data of convolution Neural network for segmentation of femur mesh model. First, the femur mesh model is obtained from the CT image. Then divide the mesh model into meaningful parts by using cluster analysis on geometric characteristic of mesh surface. Finally, transform the segments by using an appropriate mesh deformation algorithm, then create new CT images by warping CT images accordingly. Deep learning models using the data enhancement methods of this study show better image division performance compared to data augmentation methods which have been commonly used, such as geometric conversion or color conversion.
Keywords
Data augmentation; Deep learning; Medical image; Image segmentation;
Citations & Related Records
연도 인용수 순위
  • Reference
1 C. Rich, S. Lawrence, and C. -L. Giles, "Overfitting in neural nets: Backpropagation, conjugate gradient, and early stopping", Advances in neural information processing systems, 2001.
2 O. Cicek, et al, "3D U-Net: learning dense volumetric segmentation from sparse annotation", International conference on medical image computing and computer-assisted intervention. Springer, Cham, 2016.
3 P. -F. Christ, et al, "Automatic liver and lesion segmentation in CT using cascaded fully convolutional neural networks and 3D conditional random fields", International Conference on Medical Image Computing and Computer-Assisted Intervention. Springer, Cham, 2016.
4 J. -Y. Zhu, et al, "Unpaired image-to-image translation using cycleconsistent adversarial networks", IEEE Transactions on computer vision, 2017.
5 S. -C. Wong, et al, "Understanding data augmentation for classification: when to warp?", IEEE Transactions on digital image computing: techniques and applications (DICTA), 2016.
6 W. -E. Lorensen, and H. -E. Cline, "Marching cubes: A high resolution 3D surface construction algorithm", ACM siggraph computer graphics. Vol. 21. No. 4, 1987.
7 P. Yves, et al, "Interactive graph-cut segmentation for fast creation of finite element models from clinical ct data for hip fracture prediction", Computer methods in biomechanics and biomedical engineering 19.16, pp. 1693-1703, 2016.   DOI
8 L.Wang, K. He, and Z. Chen, "Statistical Analyses of Femur Parameters for Designing Anatomical Plates," Computational and Mathematical Methods in Medicine, pp. 12, 2016.
9 Y. -J. Lee, "Mesh Scissoring: Contour-Based Mesh Segmentation. PhD dissertation", Postech, 2005.
10 J. J-. Koenderink, and A. -J. Doorn, "Surface shape and curvature scales", Image and Vision Computing 10, pp. 557-565, 1992.   DOI
11 D. Comaniciu, and P. Meer, "Mean shift: A robust approach toward feature space analysis", IEEE Transactions on Pattern Analysis & Machine Intelligence 5, pp. 603-619, 2002.   DOI
12 M. Garland, A Willmott, and P. Heckbert, "Hierarchical face clustering on polygonal surfaces", ACM Symposium on Interactive 3D Graphics 2001, pp. 49-58, 2001.
13 S. Wold, K. Esbensen, and P. Geladi, "Principal component analysis", Chemometrics and intelligent laboratory systems 2.1-3, pp. 37-52, 1987.   DOI
14 T. -W. Sederberg, and, S. -R. Parry, "Free-form deformation of solid geometric models", Annual conference on Computer graphics and interactive techniques 13th (SIGGRAPH '86), 1986.
15 O. Sorkine, et al, "Laplacian surface editing", Eurographics/ACM SIGGRAPH symposium on Geometry processing 2004 (SGP '04), pp. 175-184, 2004.
16 S. Lee, G. Wolberg, and S. -Y. Shin, "Scattered data interpolation with multilevel B- splines", IEEE Transactions on Visualization and Computer Graphics, vol. 3, no. 3, pp. 228-244, 1997.   DOI
17 K. Zuiderveld. "Contrast limited adaptive histogram equalization", Graphics gems IV. Academic Press Professional, 1994.
18 P. Jaccard, "Etude comparative de la distribution florale dans une portion des Alpes et des Jura", Bull Soc Vaudoise Sci Nat 37, pp. 547-579, 1901.
19 Ronneberger, Olaf, Philipp Fischer, and Thomas Brox. "U-net: Convolutional networks for biomedical image segmentation." International Conference on Medical image computing and computer-assisted intervention. Springer, Cham, 2015.
20 M. Kistler, et al, "The virtual skeleton database: an open access repository for biomedical research and collaboration", medical Internet research, e. 245, 2013.