Browse > Article

Biochip System for Environmental Monitoring using Nanobio Technology  

Kim, Young-Kee (Department of Chemical Engineering, Hankyong National University)
Min, Jun-Hong (Department of Bionano Technology, Kyungwon University)
Oh, Byung-Keun (Department of Chemical and Biomolecular Engineering, Sogang University)
Choi, Jeong-Woo (Department of Chemical and Biomolecular Engineering, Sogang University)
Publication Information
KSBB Journal / v.22, no.6, 2007 , pp. 378-386 More about this Journal
Abstract
Bio-sensing devices, which are basically integrated and miniaturized assay systems consisted of bioreceptor and signal transducer, are advantageous in several ways. In addition to their high sensitivity, selectivity, simplicity, multi-detection capability, and real time detection abilities, they are both very small and require relatively inexpensive equipments. Two core technologies are required to develop bio-sensing devices; the fabrication of biological receptor module (both of receptor development and immobilisation of them) and the development of signal transducing instruments containing signal generation technique. Various biological receptors, such as enzymes, DNA/RNA, protein, and cell were tried to develop bio-sensing devices. And, the signal transducing instruments have also been extensively studied, especially with regard to electrochemical, optical, and mass sensitive transducers. This article addresses bio-sensing devices that have been developed in the past few years, and also discusses possible future major trends in these devices.
Keywords
Biosensor; biochip; environmental monitoring;
Citations & Related Records
Times Cited By KSCI : 2  (Citation Analysis)
연도 인용수 순위
1 Iwuoha, E. I., M. R. Smyth, and M. E. G. Lyons (1997), Organic Phase Enzyme Electrodes: Kinetics and Analytical Applications, Biosens. Bioelectron. 12, 53-75   DOI   ScienceOn
2 Campanella, L., F. Pacifici, M. P. Sammartino, and M. Tomassetti (1998), A New Organic Phase Bienzymatic Electrode for Lecithin Analysis in Food Products, Bioelectrochem. Bioenerg. 47, 25-38   DOI   ScienceOn
3 Morales, M. D., M. C. Gonzalez, B. Serra, A. J. Reviejo, and J. M. Pingarro (2005), Composite Amperometric Tyrosinase Biosensors for the Determination of The Additive Propyl Gallate in A Reversed Micellar Medium, Sens. Actuators B 106, 572-579   DOI   ScienceOn
4 Varma, S. and B. Mattiasson (2005), Amperometric Biosensor for the Detection of Hydrogen Peroxide using Catalase Modified Electrodes in Polyacrylamide, J. Biotechnol. 119, 172-180   DOI   ScienceOn
5 Mulchandani, A. and S. Pan (1999), Ferrocene-conjugated m-Phenylendiamina Conducting Polymer-incorporated Peroxidase Biosensors, Anal. Biochem. 267, 141-147   DOI   ScienceOn
6 Andreescu, S., T. Noguer, V. Magearu, and J. L. Marty (2002), Screen-printed Electrode Based on AChE for the Detection of Pesticides in Presence of Organic Solvents, Talanta 57, 169-176   DOI   ScienceOn
7 Fennouh, S., V. Casimiri, and C. Burstein (1997), Increased Paraoxon Detection Solvents Using Acetylcholinesterase Inactivation Measured With A Choline Oxidase Biosensor, Biosens. Bioelectron. 12, 97-104   DOI   ScienceOn
8 Rehak, M., M. Snejdarkova, and T. Hianik (1997), Acetylcholine Minisensor Based on Metal-supported Lipid Bilayers for Determination of Environmental Pollutants, Electroanalysis 9, 1072-1077   DOI   ScienceOn
9 Choi, J. W., J. Min, W. H. Lee (1997), Signal Analysis of Fiber-optic Biosensor for the Detection of Organophosphorus Compounds in the Contaminated Water, Korean J. of Chem. Eng. 14, 101-108   DOI
10 Choi, J. W., Y. K. Kim, S. Y. Song, I. H. Lee, and W. H. Lee (2003), Optical Biosensor Consisting of Glutathione-S-transferase for Detection of Captan, Biosens. Bioelectron. 18, 1461-1466   DOI   ScienceOn
11 Edberg, S., M. J. Allen, D. B. Smith, and National Collavorative Study (1988), National Field Evaluation of a Defined Substrate Method for the Simultaneous Enumeration of Total Coliforms and Escherichia coli from Drinking Water: Comparison with the Standard Multiple Tube Fermentation Method, Appl. Environ. Microbiol. 54, 1595-1601
12 Boom, R., C. J. A. Sol, M. M. M. Salimans, C. L. Jansen, P. M. E. Wertheim-van Dillen, and J. Van der Noordaa (1990), Rapid and Simple Method for Purification of Nucleic Acids, Journal of Clinical Microbiology 28, 495-503
13 Maylin, S., M. Martinot-Peignoux, N. Boyer, M. P. Ripault, C. Féray, M. H. Nicolas-Chanoine, and P. Marcellin (2006), 595 Evidence for Eradication of HCV, Assessed with Transcription Mediated Amplification (TMA), in Chronic Hepatitis C Patients with Sustained Virological Response to Therapy, Journal of Hepatology 44, S221
14 Jeong, S. C., I. S. Pack, E. Y. Cho, E. S. Youk, S. Park, W. K. Yoon, C. G. Kim, Y. D. Choi, J. K. Kim, and H. M. Kim (2007), Molecular Analysis and Quantitative Detection of a Transgenic Rice Line Expressing a Bifunctional Fusion TPSP, Food Control 18, 1434-1442   DOI   ScienceOn
15 Rhee, M. and M. A. Burns (2007), Nanopore Sequencing Technology: Research Trends and Applications, Trends in biotechnology 24, 580-586   DOI   ScienceOn
16 Stillitano, F., A. Mugelli, E. Cerbai, and S. Vanucci (2007), Quantification of Midkine Gene Expression in Patella caerulea (Mollusca, Gastropoda) Exposed to Cadmium Estuarine, Coastal and Shelf Science 75, 120-124   DOI   ScienceOn
17 Dyer, J., D. M. Chisenhall, and C. N. Mores (2007), A Multiplexed TaqMan Assay for the Detection of Arthropod-borne Flaviviruses, Journal of Virological Methods 145, 9-13   DOI   ScienceOn
18 Daniel, S., T. P. Raoa, K. S. Raob, S. U. Rani, G. R. K. Naidu, H. Y. Lee, and T. Kawai (2007), A Review of DNA Functionalized/grafted Carbon Nanotubes and Their Characterization, Sensors and Actuators B 112, 672-682
19 Carrascosa, L. G. (2006), Nanomechanical Biosensor: A New Sensing Tool, Trends in Analytical Chemistry: TrAC 25, 196-206   DOI   ScienceOn
20 Blaws, A. S. and W. M. Reichert (1998), Protein Patterning, Biomaterials 19, 595-609   DOI   ScienceOn
21 Kukar, T., S. Eckenrode, Y. Gu, W. Lian, M. Megginson, J. X. She, and D. Wu (2002), Protein Microarrays to Detect Protein-protein Interactions Using Red and Green Fluorescent Proteins, Anal. Biochem. 306, 50-54   DOI   ScienceOn
22 Yuk, J. S., S. J. Yi, H. G. Lee, H. J. Lee, Y. M. Kim, and K. S. Ha (2003), Characterization of Surface Plasmon Resonance Wavelength by Changes of Protein Concentration on Protein Chips, Sensor and Actuator B 422, 161-163
23 Yuk, J. S. and K. S. Ha (2004), Analysis of Immunoreactions on Protein Arrays by Using Wavelength-Interrogation-Based Surface Plasmon Resonance Sensors, J. Korean Phys. Soc. 45, 1104-1108
24 Choi, J. W., Y. S. Nam, and M. Fujihira (2004), Nanoscale Fabrication of Biomolecular Layer and Its Application to Biodevices, Biotechnol. Bioprocess Eng. 9, 76-85   DOI   ScienceOn
25 Warren, E. N., P. J. Elms, C. E. Parker, and C. H. Borchers (2004), Development of a Protein Chip: A MS-Based Method for Quantitation of Protein Expression and Modification Levels Using an Immunoaffinity Approach, Anal. Chem. 76, 4082-4092   DOI   ScienceOn
26 Sigal, G. B., C. Bamdad, A. Barberis, J. Strominger, and G. M. Whitesides (1996), A Self-Assembled Monolayer for the Binding and Study of Histidine-Tagged Proteins by Surface Plasmon Resonance, Anal. Chem. 68, 490-497   DOI   ScienceOn
27 Jiang, X. Y., R. Ferrigno, M. Mrksich, and G. M. Whitesides (2003), Electrochemical Desorption of Self-assembled Monolayers Noninvasively Releases Patterned Cells from Geometrical Confinements, J. Am. Chem. Soc. 125, 2366-2367   DOI   ScienceOn
28 Oh, B. K., Y. K. Kim, W. Lee, Y. M. Bae, W. H. Lee, and J. W. Choi (2003), Immunosensor for Detection of Legionella pneumophila using Surface Plasmon Resonance, Biosens. Bioelectron. 18, 605-611   DOI   ScienceOn
29 Trettnak, W., F. Reininger, E. Zinterl, and O. S. Wolfbeis (1993), Fiber-optic Remote Detection of Pesticides and Related Inhibitors of the Enzyme Acetylcholinesterase, Sensors and Actuators B 11, 87-90   DOI   ScienceOn
30 Kim, Y. K., B. K. Oh, and J. W. Choi (2004), Prospective of Industrial Chemistry 7, 1-8
31 Fodes-Papp, Z., B. Angerer, W. Ankenbauer, and R. Rigler (2001), Fluorescent High-density Labeling of DNA: Error-Free Substitution for a Normal Nucleotide, J. Biotechnol. 86, 237-253   DOI   ScienceOn
32 Choi, J. W., J. Min, J. W. Jung, H. W. Rhee, and W. H. Lee (1998), Fiber-optic Biosensor for the Detection of Organophosphorus Compounds using AChE-immobilized Viologen LB Films, Thin Solid Films 327-329, 676-680
33 Nathaniel, C. C., S. Stelick, and C. A. Batt (2003), Nucleic Acid Purification Using Microfabricatied Silicon Structures, Biosens. Bioelecron. 19, 59-66   DOI   ScienceOn
34 Cao, Y. C., R. Jin, C. S. Thaxton, and C. A. Mirkin (2005), A Two-color-change, Nanoparticle-based Method for DNA Detection, Talanta 67, 449-455   DOI   ScienceOn
35 Kim, Y. R., J. Min, I. H. Lee, S. Kim, A. G. Kim, K. Kim, K. Namkoong, and C. Ko (2007), Nanopore Sensor for Fast Label-free Detection of Short Double-stranded DNAs, Biosens. Bioelectron. 22, 2926-2931   DOI   ScienceOn
36 APHA, AWWA, and WPCF (1992), Standard Methods for the Examination of Water and Wastewater, 18th ed., A.E. Greeberg, L.S. Clesceri, and A.D. Eaton, Eds., Am. Public health Assoc., Washington DC
37 Panelli, S., G. Damiani, L. Espen, G. Micheli, and V. Sgaramella (2006), Towards the Analysis of The Genomes of Single Cells: Further Characterisation of the Multiple Displacement Amplification, Gene 372, 1-7   DOI   ScienceOn
38 Ha, K. S. and J. S. Yuk, (2004), Nano-bio Technology and Protein Chips, Trends in Medical Research 11, 5-14
39 Abad, J. M., F. Pariente, L. Hernàndez, H. D. Abrua, and E. Lorenzo (1998), Determination of Organophosphorus and Carbamate Pesticides Using A Piezoelectric Biosensor, Anal. Chem. 70, 2848-2855   DOI   ScienceOn
40 Yang, J. M., J. Bell, Y. Huang, M. Tirado, D. Thomas, A. H. Forster, R. W. Haigis, P. D. Swanson, B. R. Wallace, B. Martinsons, and M. Krihak (2002), An Integrated, Stacked Microlaboratory for Biological Agent Detection with DNA and Immunoassays, Biosens. Bioelectron. 17, 605-618   DOI   ScienceOn
41 Williams, J. M., M. Trope, D. J. Caplan, and D. C. Shugars (2006), Detection and Quantitation of E. faecalis by Real-time PCR (qPCR), Reverse Transcription-PCR (RT-PCR), and Cultivation During Endodontic Treatment, Journal of Endodontics 32, 715-721   DOI   ScienceOn
42 Feng, H. P. (2000), A Protein Microarray, Nature Structure Biology 7, 829-837   DOI   ScienceOn
43 Ferretti, S. S., D. A. Russel, K. E. Sapsford, and D. J. S. Richardson (2000), Self-assembled Monolayers: A Versatile Tool for the Formulation of Bio-surfaces, Trends. Anal. Chem. 19, 530-540   DOI   ScienceOn
44 Stanca, S. E. and I. C. Popescu (2004), Phenols Monitoring and Hill Coefficient Evaluation using Ttyrosinase-Based Amperometric Biosensors, Bioelectrochemistry 64, 47-52   DOI   ScienceOn
45 Sachez-Paniagua Lopez, M., E. Lopez-Cabarcos, and B. Lopez-Ruiz (2006), Organic Phase Enzyme Electrodes, Biomolecular Engineering 23, 135-147   DOI   ScienceOn
46 Chen, W. Y., W. P. Hu, Y. D. Su, A. Taylor, S. Jiang, and G. L. Chang (2007), A Multispot DNA Chip Fabricated with Mixed ssDNA/oligo (ethylene glycol) Self-assembled Monolayers for Detecting the Effect of Secondary Structures on Hybridization by SPR Imaging, Sensors and Actuator B 125, 607-614   DOI   ScienceOn
47 Salaita, K., Y. Wang, and C. A. Mirkin (2007), Applications of Dip-pen Nanolithography, Nature Nanotechnology 2, 145-155   DOI   ScienceOn
48 Zhu, H. and M. Snyder (2003), Protein Chip Technology, Curr. Opin. Chem. Biol. 7, 55-63   DOI   ScienceOn
49 Hu, Y., Q. Zhang, and J. C. Meitzer (1999), Rapid and Sensitive Detection of Esherichia coli O157:H7 in Bovine Faeces by a Multiplex PCR, J. Appl. Microbiol. 87, 867-876   DOI   ScienceOn
50 Zhu, H., M. Bilgin, R. Bangham, D. Hall, A. Casamayor, P. Bertone, N. Lan, R. Jansen, S. Bidlingmaier, T. Houfek, T. Mitchell, P. Miller, R. A. Dean, W. Gerstein, and M. Snyder (2001), Global Analysis of Protein Activities Using Proteome Chips, Science 293, 2101-2105   DOI   ScienceOn
51 Jin, Y., W. Lu, J. Hu, X. Yao, and J. Li (2007), Site-specific DNA Cleavage of EcoRI Endounclease Probed by Electrochemical Analysis Using Ferrocene Capped Gold Nanoparticles as Reporter, Electrochemistry Communications 9, 1086-1090   DOI   ScienceOn
52 Cosnier, S., C. Mousty, J. De Melo, A. Lepellec, A. Novoa, B. Polyak, and R. S. Marks (2004), Organic Phase PPO Biosensors Prepared by Multilayer Deposition of Enzyme and Alginate through Avidin-biotin Interactions, Electroanalysis 16, 2022-2029   DOI   ScienceOn
53 Federal Register (1989), Drinking Water, National Primary Drinking Water Regulations; Total Coliform; Total Coliforms (Including Fecal Coliforms and E. coli); Final Rules. Fed. Reg. 54. 27544-27568
54 Edwards K. A. and A. J. Baeumner (2006), Analysis of Liposomes, Talanta 68, 1432-1441   DOI   ScienceOn
55 Kodadek, T. (2001), Protein Microarrays: Prospects and Problems, Chem. Biol. 8, 105-116   DOI   ScienceOn
56 Kim, H. S., Y. M. Bae, Y. K. Kim, B. K. Oh, and J. W. Choi (2006), Antibody Layer Fabrication for Protein Chip to Detect E. coli O157:H7 Using Microcontact Printing Technique, J. Microbiol. Biotechnol. 16, 141-144   과학기술학회마을   DOI   ScienceOn
57 Sanchez-Ferrer, A., J. N. Rodríguez López, F. Garcia-Canovas, and F. Garcia Carmona (1995), Tyrosinase: A Ccomprehensive Review of Iits Mechanism, Biochim. Biophys. Acta 1247, 1-11   DOI   ScienceOn
58 Synder, M. and S. Field (2003), Protein Analysis on A Proteomic Scale, Nature 422, 208-215   DOI   ScienceOn
59 Bordner, R., J. Winter, and P. Scarpino (Eds). Microbial Methods for Monitoring the Environment: Water and Eastes, EPA-600/8-78-017, Environmental Monitoring and Support Laboratory, US Enivron, Protect. Agency, Cincinnati
60 Malgorzata, W. A., S. D. Llopis, A. Wheatley, R. L. McCarley, and S. A. Soper (2006), Purification and Preconcentration of Genomic DNA from Whole Lysates Using Photoactivated Polycarbonate (PPC) Microfluidic Chips, Nucleic Acids Research 34, e74-e79
61 Chen C. S., M. Mrksich, S. Huang, G. M. Whitesides, and D. E. Ingber (1997), Geometric Control of Cell Life and Death, Science 276, 1425-1428   DOI   ScienceOn
62 Pen, J. (2007), Voltametric Detection of DNA Hybridization Using a Non-competitive Enzyme Linked Assay, Biochem. Eng. J. 35, 183-190   DOI   ScienceOn
63 Service, R. F. (2003), Protein Arrays Step Out of DNA's Shadow, Science 289, 1673-1675   DOI
64 Gusev, Y., J. Sparkowski, A. Raghunathan, H. Ferguson, Jr., J. Montano, N. Bogdan, B. Schweitzer, S. Wiltshire, S. F. Kingsmore, W. Maltzman, and V. Wheeler (2003), Rolling Circle Amplification -A New Approach to Increase Sensitivity for Immunohistochemistry and Flow Cytometry, American Journal of Pathology 159, 63-69
65 Kerman, K., Y. Morita, Y. Takamura, and E. Tamiya (2003), Label-free Electrochemical Detection of DNA Hybridization on Gold Electrode, Electrochemistry Communications 5, 887-891   DOI   ScienceOn
66 Im, H., X. J. Huang, B. Gu, and Y. K. Choi (2007), A Dielectric-modulate, Nature Nanotechnology 2, 430-434   DOI   ScienceOn
67 Lee, J. H., C. H. Youn, B. . Kim, and M. B. Gu (2007), An Oxidative Stress-specific Bacterial Cell Array Chip for Toxicity Analysis, Biosens. Bioelectron. 22, 2223-2229   DOI   ScienceOn
68 Choi, J. W., Y. K. Kim, I. H. Lee, J. Min, and W. H. Lee (2001), Optical Organophosphorus Biosensor Consisting of Acetylcholinesterase/Viologen Hetero Langmuir-Blodgett Film, Biosens. Bioelectron. 16, 937-943   DOI   ScienceOn
69 MacBeath, G. and S. L. Schreiberet (2000), Printing Proteins as Microarrays for High-Throughput Function Determination, Science 289, 1760-1763
70 Ruiz-Taylor, L. A., T. L. Martin, F. G. Zaugg, K. Witte, P. Indermuhle, S. Nock, and P. Wagner (2001), Monolayers of Derivatized Poly(L-lysine)-grafted Poly(ethylene glycol) on Metal Oxides as a Class of Biomolecular Interfaces, Proc. Natl. Acad. Sci. 98, 852-857
71 Mitchell, P. (2002), A Perspective on Protein Microarrays, Nat. Biotechnol. 20, 225-229   DOI   ScienceOn
72 Andreu, A., J. W. Merkert, L. A. Lecaros, B. L. Broglin, J. T. Brazell, and M. El-Kouedi (2006), Detection of DNA Oligonucleotides on Nanowire Array Electrodes Using Chronocoulometry, Sensors and Actuators B 114, 1116-1120   DOI   ScienceOn
73 Min, J. and A. Baeumner (2002), Highly Sensitive and Specific Detection of Viable Escherichia coli in Drinking Water, Analytical Biochemistry 303, 186-193   DOI   ScienceOn
74 Choi, J. W., Y. K. Kim, B. K. Oh, S. Y. Song, and W. H. Lee (2003), Optical Biosensor for Simultaneous Detection of Captan and Organophosphorus Compounds, Biosens. Bioelectron. 18, 591-597   DOI   ScienceOn
75 Baeumner, A. J., R. N. Cohen, V. Miksic, and J. Min (2003), RNA Biosensor for the Rapid Detection of Viable Escherichia coli in Drinking Water, Biosens. Bioelectron. 18, 405-413   DOI   ScienceOn