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http://dx.doi.org/10.12651/JSR.2020.9.3.233

Database of National Species List of Korea: the taxonomical systematics platform for managing scientific names of Korean native species  

Park, Jongsun (InfoBoss Inc. and InfoBoss Research Center)
An, Jung-Hyun (National Institute of Biological Resources)
Kim, Yongsung (InfoBoss Inc. and InfoBoss Research Center)
Kim, Donghyun (InfoBoss Inc. and InfoBoss Research Center)
Yang, Byeong-Gug (National Institute of Biological Resources)
Kim, Taeho (National Institute of Biological Resources)
Publication Information
Journal of Species Research / v.9, no.3, 2020 , pp. 233-246 More about this Journal
Abstract
A scientific name is one of changeable terms in biology whenever additional research results of specific taxa is accumulated. The Database of the National Species List of Korea (DBNKo) was developed to manage taxonomic information of Korean species, designed to describe the changeable and complex taxonomical structure and information. A Korean Taxonomical Serial Number (KTSN) was assigned to each taxon, different from the normally used systems that the scientific name was considered as primary key to manage higher rank of taxa systematically. Common names were also treated with the KTSN, reflecting that common name is considered as one type of taxon. Additional taxonomic information (e.g., synonyms, original names, and references) was also added to the database. A web interface with an intuitive dashboard presenting taxonomic hierarchical structure is provided to experts and/or managers of the DBNKo. Currently, several biological databases are available in the National Institute of Biological Resources (NIBR) such as a specimen database, a digital library, a genetic information system, and the shared species data based on the DBNKo. The DBNKo started sharing species information with other institutions such as the Nakdonggang National Institute of Biological Resources. It is an ideal centralized species database to manage standardized information of Korean species.
Keywords
centralized species database; Database of National Species List of Korea; DBNKo; Korean Taxonomical Serial Number; KTSN; web interface;
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1 Ereshefsky, M. 1997. The evolution of the Linnaean hierarchy. Biology and Philosophy 12(4):493-519.   DOI
2 Federhen, S. 2011. The NCBI taxonomy database. Nucleic Acids Research 40(D1):D136-D143.   DOI
3 Froese R, Pauly D. 2009. FishBase.
4 Garten, B.B. 1886. Fuhrer durch den Koniglich botanischen Garten der Universitat zu Breslau. JU Kerns Verlag (Max Muller).
5 Griffiths, G.C. 1976. The future of Linnaean nomenclature. Systematic Zoology 25(2):168-173.   DOI
6 Hernandez-Ledesma, P., W.G. Berendsohn, T. Borsch, S. Von Mering, H. Akhani, S. Arias, I. Castaneda-Noa, U. Eggli, R. Eriksson and H. Flores-Olvera. 2015. A taxonomic backbone for the global synthesis of species diversity in the angiosperm order Caryophyllales. Willdenowia. pp. 281-383.
7 Hong, Y., Y. Luo, Q. Gao, C. Ren, Q. Yuan and Q.-E. Yang. 2017. Phylogeny and reclassification of Aconitum subgenus Lycoctonum (Ranunculaceae). PLoS One. 12(1).
8 Cronquist, A. 1965. The status of the general system of classification of flowering plants. Annals of the Missouri Botanical Garden 52(3):281-303.   DOI
9 Ipni. 2015. The international plant names index. The Royal Botanic Gardens Kew.
10 Kalwij, J.M. 2012. Review of 'The Plant List, a working list of all plant species'. Journal of Vegetation Science 23(5):998-1002.   DOI
11 Kim, Y., J. Park and Y. Chung. 2019a. Comparative Analysis of Chloroplast Genome of Dysphania ambrosioides (L.) Mosyakin & Clemants Understanding Phylogenetic Relationship in Genus Dysphania R. Br. Korean J. Plant Res. 32(6):644-668.   DOI
12 Kim, Y., Y. Chung and J. Park. 2019b. The complete chloroplast genome sequence of Dysphania pumilio (R. Br.) Mosyakin & Clemants(Amaranthaceae). Mitochondrial DNA Part B 4(1):403-404.   DOI
13 Park, J. and Y. Kim. 2019. The second complete chloroplast genome of Dysphania pumilio (R. Br.) mosyakin & clemants(Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA Part B 4(1):1428-1429.   DOI
14 Kim, Y., Y. Chung and J. Park. 2020. The complete chloroplast genome of Oxybasis glauca (L.) S. Fuentes, Uotila & Borsch(Amaranthaceae) as the first chloroplast genome in genus Oxybasis. Mitochondrial DNA Part B 5(2): 1410-1412.   DOI
15 Linnaeus, C. 1753. Binomial nomenclature and hierarchical classification system. Species Plantarum.
16 NatureServe, F. 2008. NatureServe Explorer: an online encyclopedia of life. NatureServe Arlington, Virginia.
17 Roskov, Y., T. Kunze, L. Paglinawan, T. Orrell, D. Nicolson, A. Culham, N. Bailly, P. Kirk, T. Bourgoin and G. Baillargeon. 2013. Species 2000 & ITIS Catalogue of Life, 2013 Annual Checklist.
18 Secretariat, G. 2013. GBIF Backbone Taxonomy. Global Biodiversity Information Facility, http://www gbif org/species/2879175.
19 Stearn, W.T. 1959. The background of Linnaeus's contributions to the nomenclature and methods of systematic biology. Systematic Zoology 8(1):4-22.   DOI
20 Sun, P.L., C.Y. Ku and D.H. Shih. 2015. An implementation framework for E-Government 2.0. Telematics and Informatics 32(3):504-520.   DOI
21 Chung, Y., C. Lee, W. Paik, J. Ahn and A. Park. 2001. Taxonomical investigation of the goosefoot (Genus Chenopodium; Chenopodiaceae) in Korea on a basis of external morphological characters. Kor J Weed Sci. 21:229-235.
22 Wilson, H.D., S.C. Barber and T. Walters. 1983. Loss of duplicate gene expression in tetraploid Chenopodium. Biochemical Systematics and Ecology 11(1):7-13.   DOI
23 Wilson, E.O. 2003. The encyclopedia of life. Trends in Ecology & Evolution 18(2):77-80.   DOI
24 Chase, M.W., M. Christenhusz, M. Fay, J. Byng, W.S. Judd, D. Soltis, D. Mabberley, A. Sennikov, P.S. Soltis and P.F. Stevens. 2016. An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV. Botanical Journal of the Linnean Society 181(1):1-20.   DOI
25 Aellen, P. 1930. Die wolladventiven Chenopodien Europas.
26 Chen, Y. and Z. Yang. 2018. Characterization of the complete plastome of Dysphania botrys, a candidate plant for cancer treatment. Mitochondrial DNA Part B 3(2):1214-1215.   DOI