A report of nine unrecorded bacterial species in the phylum Bacteroidetes collected from freshwater environments in Korea |
Park, Sanghwa
(Bacterial Resources Research Division, Freshwater Bioresources Research Bureau, Nakdonggang National Institute of Biological Resources(NNIBR))
Beak, Kiwoon (Bacterial Resources Research Division, Freshwater Bioresources Research Bureau, Nakdonggang National Institute of Biological Resources(NNIBR)) Han, Ji-Hye (Bacterial Resources Research Division, Freshwater Bioresources Research Bureau, Nakdonggang National Institute of Biological Resources(NNIBR)) Nam, Yoon-Jong (Bacterial Resources Research Division, Freshwater Bioresources Research Bureau, Nakdonggang National Institute of Biological Resources(NNIBR)) Lee, Mi-Hwa (Bacterial Resources Research Division, Freshwater Bioresources Research Bureau, Nakdonggang National Institute of Biological Resources(NNIBR)) |
1 | Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725-2729. DOI |
2 | Bowman, J.P., S.A. McCammon, M.V. Brown, D.S. Nichols and T.A. McMeekin. 1997. Diversity and association of psychrophilic bacteria in Antarctic sea ice. Appl. Environ. Microbiol. 63:3068-3078. |
3 | DeLong, E.F., D.G. Franks and A.L. Alldredge. 1993. Phylogeneticdiversity of aggregate-attached vs. free-living marine bacterial assemblages. Limnol. Oceanogr. 38:924-934. DOI |
4 | Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17:368-376. DOI |
5 | Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783. DOI |
6 | Fitch, W.M. 1971. Towards defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20:406-416. DOI |
7 | Glockner, F.O., B.M. Fuchs and R. Amann. 1999. Bacterioplankton compositions of lakes and oceans: a first comparison based on fluorescence in situ hybridization. Appl. Environ. Microbiol. 65:3721-3726. |
8 | Jeon, Y.S., K. Lee, S.C. Park, B.S. Kim, Y.J. Cho, S.M. Ha and J. Chun. 2014. EzEditor: A versatile sequence alignment editor for both ribosomal RNA and protein coding genes. Int. J. Syst. Evol. Microbiol. 64:689-691. DOI |
9 | Ludwig, W. and H.P. Klenk. 2001. Overview: a phylogenetic backboneand taxonomic framework for prokaryotic systematics. Bergey's Manual of Systematic Bacteriology vol. 1, Springer, pp. 49-66. |
10 | Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721. DOI |
11 | Ludwig, W., J. Euzeby and W.B. Whitman. 2010. Road map of the phyla Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes. Bergey's Manual of Systematic Bacteriology vol. 4, Springer, pp. 1-19. |
12 | O'Sullivan, L.A., A.J. Weightman and J.C. Fry. 2002. New degenerate Cytophaga-Flexibacter-Bacteroides-specific 16S ribosomal DNA-targeted oligonucleotide probes reveal high bacterial diversity in River Taffepilithon. Appl. Environ. Microbiol. 68:201-210. DOI |
13 | Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425. |