A report on 33 unrecorded bacterial species of Korea isolated in 2014, belonging to the class Gammaproteobacteria |
Lim, Yeonjung
(Department of Biological Sciences, Inha University)
Joung, Yochan (Department of Biological Sciences, Inha University) Nam, Gi Gyun (Department of Biological Sciences, Inha University) Jahng, Kwang-Yeop (Department of Life Sciences, Chonbuk National University) Kim, Seung-Bum (Department of Microbiology, Chungnam National University) Joh, Ki-seong (Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies) Cha, Chang-Jun (Department of Systems Biotechnology, Chung-Ang University) Seong, Chi-Nam (Department of Biology, Sunchon National University) Bae, Jin-Woo (Department of Biology, Kyung Hee University) Im, Wan-Taek (Department of Biotechnology, Hankyong National University) Cho, Jang-Cheon (Department of Biological Sciences, Inha University) |
1 | Kersters, K., P. De Vos, M. Gillis, J. Swings, P. Vandamme and E. Stackebrandt. 2006. Introduction to the Proteobacteria. In The prokaryotes, pp. 3-37. Springer. |
2 | Kim, A., S. Lee, K. Han and T. Ahn. 2012a. Arenimonas aquaticum sp. nov., a member of the Gammaproteobacterium, isolated from a freshwater reservoir. Int. J. Syst. Evol. Microbiol. 50:354-358. |
3 | Kim, O., Y. Cho, K. Lee, S. Yoon, M. Kim, H. Na, S. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012b. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721. DOI |
4 | Parte, A.C. 2014. LPSN-list of prokaryotic names with standing in nomenclature. Nucleic Acids Res. 42:D613-6. DOI |
5 | Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425. |
6 | Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30:2725-2729. DOI |
7 | Wang, Y., H.F. Sheng, Y. He, J.Y. Wu, Y.X. Jiang, N.F. Tam, and H.W. Zhou. 2012. Comparison of the levels of bacterial diversity in freshwater, intertidal wetland, and marine sediments by using millions of illumina tags. Appl. Environ. Microbiol. 78:8264-8271. DOI |
8 | Williams, K.P., J.J. Gillespie, B.W. Sobral, E.K. Nordberg, E.E. Snyder, J.M. Shallom and A.W. Dickerman. 2010. Phylogeny of Gammaproteobacteria. J. Bacteriol. 192:2305-2314. DOI |
9 | Yan, S., M. Yu, Y. Wang, C. Shen and X. Zhang. 2011. Catenovulum agarivorans gen. nov., sp. nov., a peritrichously flagellated, chain-forming, agar-hydrolysing gammaproteobacterium from seawater. Int. J. Syst. Evol. Microbiol. 61:2866-2873. DOI |
10 | Zhang, J., X. Zhang, Y. Liu, S. Xie and Y. Liu. 2014. Bacterioplankton communities in a high-altitude freshwater wetland. Ann. Microbiol. 64:1405-1411. DOI |
11 | Cho, J.C. and S.J. Giovannoni. 2004. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70:432-440. DOI |
12 | Du, Z., D. Zhang, S. Liu, J. Chen, X. Tian, Z. Zhang, H. Liu and G. Chen. 2009. Gilvimarinus chinensis gen. nov., sp. nov., an agar-digesting marine bacterium within the class Gammaproteobacteria isolated from coastal seawater in Qingdao, China. Int. J. Syst. Evol. Microbiol. 59:2987-2990. DOI |
13 | Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791. DOI |
14 | Garrity, G., D. Brenner, N. Krieg and J. Staley. 2005. Bergey's Manual of Sytematic Bacteriology. Volume 2 (The Proteobacteria), part B (The Gammaproteobacteria). New York: Springer. |
15 | Giovannoni, S.J., E.F. DeLong, T.M. Schmidt and N.R. Pace. 1990. Tangential flow filtration and preliminary phylogenetic analysis of marine picoplankton. Appl. Environ. Microbiol. 56:2572-2575. |
16 | Jeon, Y., K. Lee, S. Park, B. Kim, Y. Cho, S. Ha and J. Chun. 2014. EzEditor: a versatile sequence alignment editor for both rRNA-and protein-coding genes. Int. J. Syst. Evol. Microbiol. 64:689-691. DOI |
17 | Keller-Costa, T., A. Jousset, L. van Overbeek, J.D. van Elsas and R. Costa. 2014. The freshwater sponge Ephydatia fluviatilis harbours diverse Pseudomonas species (Gammaproteobacteria, Pseudomonadales) with broad-spectrum antimicrobial activity. PLoS One 9: e88429. DOI |