Browse > Article
http://dx.doi.org/10.12651/JSR.2015.4.2.127

Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes  

Han, Ji-Hye (Department of Microbiology and Molecular Biology, Chungnam National University)
Joung, Yochan (Department of Microbiology and Molecular Biology, Chungnam National University)
Kim, Tae-Su (Department of Microbiology and Molecular Biology, Chungnam National University)
Bae, Jin-Woo (Department of Biology, Kyung Hee University)
Cha, Chang-Jun (Department of Biotechnology, Chung-Ang University)
Chun, Jongsik (School of Biological Sciences, Seoul National University)
Im, Wan-Taek (Department of Biotechnology, Hankyong National University)
Jahng, Kwang Yeop (Department of Life Sciences, Chonbuk National University)
Jeon, Che Ok (Department of Life Science, Chung-Ang University)
Joh, Kiseong (Department of Bioscience and Biotechnology, Hankuk University of Foreign Studies)
Seong, Chi Nam (Department of Biology, Sunchon National University)
Yoon, Jung-Hoon (Department of Food Science and Biotechnology, Sungkyunkwan University)
Cho, Jang-Cheon (Department of Biological Sciences, Inha University)
Kim, Seung Bum (Department of Microbiology and Molecular Biology, Chungnam National University)
Publication Information
Journal of Species Research / v.4, no.2, 2015 , pp. 127-136 More about this Journal
Abstract
As an outcome of the study on the bacterial species diversity in Korea, we report 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes. The unrecorded species excavated through this study were assigned to 12 different genera of 7 families, namely Bacillus, Halobacillus, Lysinibacillus and Thalassobacillus of Bacillaceae, Brevibacillus and Paenibacillus of Paenibacillaceae, Viridibacillus of Planococcaceae, Salinicoccus and Staphylococcus of Staphylococcaceae, Enterococcus of Enterococcaceae, Lactobacillus of Lactobacillaceae, and Lactococcus of Streptococcaceae, respectively. The bacterial isolates were obtained from various ecosystems in Korea. The isolates were identified based on 16S rRNA gene sequences, and those exhibiting at least 99% sequence similarity with known bacterial species but never reported in Korea were selected as unrecorded species. The selected isolates were subjected to further taxonomic characterization including the analysis of cell shape and fine structure using electron microscope, colony color and shapes, enzyme activities and carbon source utilization. The descriptive information on the 24 unrecorded species are provided.
Keywords
Bacillales; Firmicutes; Lactobacillales; unrecorded bacterial species;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Spring, S. 2009. Genus IX. Halobacillus Spring, Ludwig, Marquez, Ventosa and Schleifer 1996, $495^{VP}$. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, The Firmicutes, pp. 164-168. Edited by De Vos, P., Garrity, G., Jones, D., Krieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K.-H., and Whitman, W. B. New York: Springer.
2 Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725-2729.   DOI   ScienceOn
3 Tannock, G. (editor) 2005. Probiotics and Prebiotics: Scientific Aspects (1st ed.). Caister Academic Press.
4 Ventosa, A. 2009. Genus IV. Salinicoccus Ventosa, Marquez, Ruiz-Berraquerro and Kocur 1990b, $320^{VP}$ (Effective publication: Ventosa, Marquez, Ruiz-Berraquerro and Kocur 1990a, 32). In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, The Firmicutes, pp. 426-429. Edited by De Vos, P., Garrity, G., Jones, D., Krieg, N. R., Ludwig, W., Rainey, F. A., Schleifer, K.-H., and Whitman, W. B. New York: Springer.
5 Aizawa, T., M. Urai, N. Iwabuchi, M. Nakajima and M. Sunairi. 2010. Bacillus trypoxylicola sp. nov., xylanase-producing alkaliphilic bacteria isolated from the guts of Japanese horned beetle larvae (Trypoxylus dichotomus septentrionalis). Int. J. Syst. Evol. Microbiol. 60:61-66.   DOI
6 De Vos, P., G.M. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.-H. Schleifer and W.B. Whitman (editors). 2009. Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, The Firmicutes. New York: Springer.
7 Dworkin, M., S. Falkow, E. Rosenberg, K.-H. Schleifer and E. Stackebrandt (editors). 2006. The Prokaryotes, 3rd edn, vol. 3. New York: Springer.
8 Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17: 368-376.   DOI
9 Killer, J., S. Dubna, I. Sedlacek and P. Svec. 2014. Lactobacillus apis sp. nov., from the stomach of honeybees (Apis mellifera), having an in vitro inhibitory effect on the causative agents of American and European foulbrood. Int. J. Syst. Evol. Microbiol. 64:152-157.   DOI
10 Kim, J.Y., N.R. Shin, H.K. Na, D.W. Hyun, T.W. Whon, P.S. Kim, J.H. Yun and J.W. Bae. 2013. Enterococcus diestrammenae sp. nov., isolated from the gut of Diestrammena coreana. Int. J. Syst. Evol. Microbiol. 63:4540-4545.   DOI
11 Kim, O.S., Y.J. Cho, K. Lee, S.H. Yoon, M. Kim, H. Na, S.C. Park, Y.S. Jeon, J.H. Lee, H. Yi, S. Won and J. Chun. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721.   DOI
12 Kluge, A.G. and J.S. Farris. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18:1-32.   DOI
13 Konig, H. 2006. Bacillus species in the intestine of termites and other soil invertebrates. J. Appl. Microbiol. 101:620-627.   DOI
14 Kuhnigk, T., E.M. Borst, A. Breunig, H. Konig, M.D. Collins, R.A. Hutson and P. Kampfer. 1995. Bacillus oleronius sp. nov., a member of the hindgut flora of the termite Reticulitermes santonensis (Feytaud). Can. J. Microbiol. 41:699-706.   DOI
15 Ley, R.E., D.A. Peterson and J.I. Gordon. 2006. Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124:837-848.   DOI
16 McSpadden Gardner, B.B. 2004. Ecology of Bacillus and Paenibacillus spp. in agricultural systems. Phytopathology 94:1251-1258.
17 Saitou, N. and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.