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http://dx.doi.org/10.7732/kjpr.2013.26.4.491

Development of EST-SSR Markers and Analysis of Genetic Diversity Using Persimmon (Diospyros kaki Thunb) Cultivars Collecting from Domestic  

Seo, Dong Hywi (School of Applied Ecological Resources, Kyungpook National University)
Jung, Kyung Mi (Sangju Persimmon Experiment Station, Gyeongbuk Agricultural Technology Administration)
Kim, Se Jong (Sangju Persimmon Experiment Station, Gyeongbuk Agricultural Technology Administration)
Kim, Kyung-Min (Division of Plant Biosciences, Kyungpook National University)
Publication Information
Korean Journal of Plant Resources / v.26, no.4, 2013 , pp. 491-502 More about this Journal
Abstract
Persimmon (Diospyros kaki Thunb) fruit is one of the most important fruit and have been cultivated from ancient times in Korea. In this study, we found 16 EST-SSR markers that contained one or more EST-SSR sites from 246 cDNA sequences. The developing of EST-SSR marker analysis from 42 persimmon cultivars was compared by genetic relationships and morphological relationships using 6 qualitative traits (fruit related 6 traits) and 19 quantitative traits (flower related 19 traits). In this study, 25 primer sets were tested to identify PCR polymorphism and 14 potential EST-SSR primer pairs were selected. The result of morphological relationship EST-SSR marker analysis showed that the coefficient 0.02 was difficult to categorize in several groups. And then, coefficient 0.77 of genetic relationship showed that the group was classified as four groups. The result of correlation distance between genetic relationship and morphological relationship were investigated was low significance (-0.03). Our results also provided an optimized method for improvement of breeding efficiency and introduce of superior character at persimmon cultivars using EST-SSR markers which was useful for further investigation.
Keywords
cDNA; Dendrogram; DNA marker; Persimmon;
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